Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01648 ATGATGAGCGAGCAAATCTTCCAGAGAGCAATTCTAGAGGCAGGCAGAGGACAGGTAGTAAACACGGTAGAGGAAATTCAGGAGAGGCATGACGCTGTTAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTGTTAGTTGATGCTCAAGGAGAAATTCTGGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTGCAGAAGAACTCACGAAAATGGATGTGCATTGCCATTGTTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 366 0.418 MMSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIVILLIIVAIIVVGVLKPWKSS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01648 121 SUPERFAMILY t-snare proteins 3 78 IPR010989 GO:0016020|GO:0016192
Vimu9g01648 121 Pfam Syntaxin 3 58 IPR006011 GO:0016020
Vimu9g01648 121 Gene3D - 16 116 - -
Vimu9g01648 121 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 23 85 IPR000727 -
Vimu9g01648 121 PANTHER SYNTAXIN 21 105 IPR045242 -
Vimu9g01648 121 FunFam Syntaxin 132 16 116 - -
Vimu9g01648 121 Pfam SNARE domain 59 111 IPR000727 -
Vimu9g01648 121 SMART tSNARE_6 18 85 IPR000727 -
Vimu9g01648 121 CDD SNARE_syntaxin1-like 22 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01648 Vimu-Chr9 25721087 25722141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01648 3 118 SNARE and Associated Proteins AT3G03800 70.690 3.17e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01648 K08486 - gmx:100800991 214.157