Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01645 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAAGAGACCGCAGCCGGAGCTTCCGACCAGACCCACCGTCAAATCTTCGACCACTACGCCTCGCACTCGCTCATCCCCGACCACTTTCTCCACGCGCCAACTCACTCCGCCGTCACCACTGCCGCCGCCGCCACCGTCGACTTCACCAACCACCACCACCACCACTTCAACCCGCAGCCGCACCACCACCACCTCAACAACCACCACCACCACCCCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTTCCCCACGTCAACGCAGCCAACTGCGGTCCCGGGCCCGGACCCGGTCCGGGCGGACTTCTCCTCGTTCCCAAGTCTGAGGACGTCGGCCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGTGGGCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTCTACCGTCGGTCTCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCACGCTGTCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTCATCGCAGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGTGGTGGCGCCTGTCTCTTCCCCCACCGTCGGAAAATAAACATCAATCATTGATTGAGTTTGCCTCTCCCAAGGGCACTTGCGTCTTTTCCCTACCCCTTGCATAG 834 0.6151 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAATVDFTNHHHHHFNPQPHHHHLNNHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWWRLSLPPPSENKHQSLIEFASPKGTCVFSLPLA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01645 277 Gene3D - 186 270 IPR036893 GO:0003677|GO:0005634
Vimu9g01645 277 Pfam SBP domain 196 243 IPR004333 GO:0003677
Vimu9g01645 277 SUPERFAMILY SBT domain 194 245 IPR036893 GO:0003677|GO:0005634
Vimu9g01645 277 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Vimu9g01645 277 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 178 242 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01645 Vimu-Chr9 25686033 25686866 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01645 1 243 SBP-box Gene Family AT1G02065 44.231 1.27e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu9g01645 SBP 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01645 - - vun:114181599 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01645 9 25686033 25686866 Vimu9g01645 9 25686033 25686866 ECH