Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01644 ATGATTGAGTTTGCCGTACGTGGGGAAATCCCGAGGGCATTTGCGTCCCTAACATGTTTCTTGTTTGCTCTTACTCTACTTTCAGTTTTGCAACCTACGTTCCATCTTCTCTCTGAATTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCCCAGTCGTCGTCGGTGACGGTGGCAGTGTCACCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCACAAACCCTTCTACAAATTCAAGCTCACTGTTTTTCTCCAGCGGGTAG 375 0.48 MIEFAVRGEIPRAFASLTCFLFALTLLSVLQPTFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSTNPSTNSSSLFFSSG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01644 124 SUPERFAMILY SBT domain 33 64 IPR036893 GO:0003677|GO:0005634
Vimu9g01644 124 ProSiteProfiles Zinc finger SBP-type profile. 1 61 IPR004333 GO:0003677
Vimu9g01644 124 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 115 IPR044817 GO:0003677
Vimu9g01644 124 MobiDBLite consensus disorder prediction 53 124 - -
Vimu9g01644 124 Pfam SBP domain 33 60 IPR004333 GO:0003677
Vimu9g01644 124 MobiDBLite consensus disorder prediction 65 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01644 Vimu-Chr9 25683950 25685737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01644 34 66 SBP-box Gene Family AT1G20980 81.818 2.37e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu9g01644 SBP 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01644 - - gmx:100778566 149.828