Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01643 ATGAACTTTCCAGACACCTTCACCCTCGCCACCACCACCCCCACAAAACAGGAAACCACTAACAACATTCTTTCCTACTCATCATCATGCCTACAACCTACTATTTCTACCCACATCACCACGCCGCCGCCGGAGAGTTACGCCGCCGCTCACGTCCACTGGGACCCTCACCTCACCTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATGTTACTATTCATGATGTTAATAAATATAATAACAATGGTAATAATGTTACCACTCTGGGGAAACCACACGTGTGCCGCGTTCCTGGTGGTGTTGTTATTTCGGGGAGCCGACACGTGGGCGCTGACGATGGTGATATTACACTGCGGAATCCACACGTGTACGCCGGTGATGATGGTGCTGGTTACTTTTTAGAGAACAACGATAAGAGAGCGCGGTGGTGTCATGGAGGAGCTGCCGGTGGCGGGAGAGTGAAAACGGCGGCGGTTGGGATGGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGTTGGTGAATGCCAAAGAGTACCATAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCACCCAAAGTTGTGGTGTTGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGACGAGTCAAAGAGAAGTTGCAGGAGAAGATTAGCAGGCCATAATGAGAGAAGAAGAAAAAGCTCTCACCTTTCTGTTACCAGAAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATTTGAGAGCAGTGATAATTGGTCATCTGATGCTGATCTCTCCACAAGATGCAGTGCAGCATTGCTTGAACTGATAGCAGAAAACCGTGCTGCCCTAATGACAAGACAACAAGAAGAACATGTTTATGTTGTGGGCCAGCATGATGATGAAGAAGAACAAGAGTTTGTGGAGATACAACCTGAGTCCAATTATTTTCCTAAGCACATGTTTTTTCAGACACAATAA 1002 0.479 MNFPDTFTLATTTPTKQETTNNILSYSSSCLQPTISTHITTPPPESYAAAHVHWDPHLTCLHLGKRHYFEDVTIHDVNKYNNNGNNVTTLGKPHVCRVPGGVVISGSRHVGADDGDITLRNPHVYAGDDGAGYFLENNDKRARWCHGGAAGGGRVKTAAVGMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSFESSDNWSSDADLSTRCSAALLELIAENRAALMTRQQEEHVYVVGQHDDEEEQEFVEIQPESNYFPKHMFFQTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01643 333 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Vimu9g01643 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 146 254 IPR044817 GO:0003677
Vimu9g01643 333 FunFam Squamosa promoter-binding-like protein 14 157 227 - -
Vimu9g01643 333 Pfam SBP domain 166 239 IPR004333 GO:0003677
Vimu9g01643 333 Gene3D - 159 227 IPR036893 GO:0003677|GO:0005634
Vimu9g01643 333 SUPERFAMILY SBT domain 164 242 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01643 Vimu-Chr9 25645071 25646725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01643 163 246 SBP-box Gene Family AT2G42200 70.238 4.92e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu9g01643 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01643 - - pvu:PHAVU_010G056200g 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01643 9 25645071 25646725 Vimu9g01643 9 25645071 25646725 ECH