Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01637 ATGGCACCTTCAACACTGTCTTTCGCTCTTCTCCTTTCTCTGACATTCTTCCATAATTTCCATGCTTCGTCTTCTTTATCTCTTTCTGTCGAGAACTTCAAAGAAGATGTCATGGTGTCATCACCGGAAAAAACATTCACTGCAGGCTTTTACGCCGTCGGACAAAACGCTTTCTGCTTCGCAATATGGTACACGCGCTCCCCGGACACCGTCGTTTGGATGGCCAACCGGGACCGTCCGGTAAACGGAAAACGCTCCACTCTATCCCTTCTCACCACCGGTAACCTCGTACTCACAGACGCTGGCCAGTTCCAAGTGTGGTCCACCAACACCGCCGCCGAATCCAACCAAGTCCAGTTGCGTTTGTACGACAACGGGAACCTCGTACTCCTCGAAAGCCGGAACAGTTCCTCTGAGGTTGTGATATGGCAGAGCTTCGATTTCCCAACCGACACGCTTCTTCCTGGTCAACCTCTGACTAAGAGTGGCAGCTTGGTTTCCTCCAGAAGCGGGAGCAACTTCTCCTCCGGTTTCTACAGGCTCTTCTTCGACTCCGAGAATGTTCTTCGCATCATGTACCAGGGTCCTCAAGTTTCCAGCGTCTTTTGGCCGGACCCTTGGCTTCAGAACAACAACTTCGGGAACGGTGGCGCCGGAAATGGCAGATCCACTTACAACGATAGCAGGGTCGCTGTGCTTGATGATTTGGGGTACCTGGTTTCTTCCGATAACTTCACTTTCAGAAGCATTGATTACGGCACGGTGCTGCAACGGAGGTTGACCCTCGATCACGACGGTAGTGCGAGGGTGTACAGCAAGAAGGATAGGGAAGAGAAGTGGACAATGGCGGGGGAATTTCGCTCACATCCGTGCTACGCTCATGGGATTTGTGGGGCTAACAGTTATTGCAGATACGACCCTCCCAGTGGTAGAAAGTGTTCGTGCCTCCCAGGTCATTCTTGGGTTGATAGAAAAGACTGGTCTCAAGGTTGCAAACCAACTTTCGAGCATTTGTGCAGCAGCAACAACAGAACAAAGAAAGAGTCTCGCTTCTTGCGCATACCTGATGTTGATTTCTACGGATACGACTATGGCTACTTTGGAAATTACACCTATCAACAGTGTGAGAATCTCTGCTCGGAGATGTGCGAATGCAGAGGGTTTCAACACAGCTTTTCAGTTGAAAATGCTTTTTTTCAGTGCTACCCAAAGACGCATTTGCGTAATGGGAATAGTCAACCGGGTTTCACGGGATCATTCTTCCTGAAGCTTCCTTCATCGTCTCGTGATGAATTCGAGAACACCATCCAAAATAATGGCTTGGTTTGTGGGGGAGATGGTGAGGAGGCAGAGATGCTTGACAGATTGTATGTCCAAGGGGGAGAAAATGGATCGGTGAAGTTCATGCTGTGGTTTGCAAGCGCCTTGGGAGGAGTTGAACTGGTGTGCATCTTTCTGGTGTGGTGTTTCTTGTTTAGGAATAATAGAACGTTACCATCAGGTGCTGAGGGACAAGGGTATGTTCTTGCAGCAGCTGCGGGGTTCAGAAAATTCAGTTACTCTGAGCTGAAACAAGCCACCAAAGGTTTCAGTGAAGAGATAGGAAGGGGAGCTGGAGGTACTGTGTATAAGGGTGTCTTGGAAGATAATCAAGTCGTGGCAATAAAGCGTCTGCATGAAGTAGCAAACCAGGGAGAAAGCGAGTTTCTGGCTGAGGTAAGCATCATTGGAAGGCTAAACCACATGAACTTGATATGCATGTTGGGGTATTGTGCAGAGGGAAAGCATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTGGCTCAGAACCTTTCATCAGATTCAAATGTACTTGGGTGGAGCAAAAGGTATAACATTGCTCTGGGAACAGCAAGGGGTCTGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATCAAGCCCCAAAATATACTTCTTGACTCTGATTATAAACCAAAGGTAGGAGATTTTGGCTTGTCTAAGCTACTTAACAGGAACAACCTCAACAATTCAAGCTTTTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCATTGTTGTCTTGGAGATGATCACTGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGAGTTAGAAGCAGAATCACCTCATCATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGATGAAAGGATCAGAAAATGGATCATCTTGGGTGGATCAAATCGTTGACCCTGCTTTGGGATCAAACTATGACATGAATGAAGTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTGGAGGAAGAGAAAAATGTCAGGCCCAGCATGAGTCGAGTAGCAGAGAAGCTTCAGAGTCATATGCACACGATTGTTGATGTTTTTAACAAAGAATAG 2478 0.4734 MAPSTLSFALLLSLTFFHNFHASSSLSLSVENFKEDVMVSSPEKTFTAGFYAVGQNAFCFAIWYTRSPDTVVWMANRDRPVNGKRSTLSLLTTGNLVLTDAGQFQVWSTNTAAESNQVQLRLYDNGNLVLLESRNSSSEVVIWQSFDFPTDTLLPGQPLTKSGSLVSSRSGSNFSSGFYRLFFDSENVLRIMYQGPQVSSVFWPDPWLQNNNFGNGGAGNGRSTYNDSRVAVLDDLGYLVSSDNFTFRSIDYGTVLQRRLTLDHDGSARVYSKKDREEKWTMAGEFRSHPCYAHGICGANSYCRYDPPSGRKCSCLPGHSWVDRKDWSQGCKPTFEHLCSSNNRTKKESRFLRIPDVDFYGYDYGYFGNYTYQQCENLCSEMCECRGFQHSFSVENAFFQCYPKTHLRNGNSQPGFTGSFFLKLPSSSRDEFENTIQNNGLVCGGDGEEAEMLDRLYVQGGENGSVKFMLWFASALGGVELVCIFLVWCFLFRNNRTLPSGAEGQGYVLAAAAGFRKFSYSELKQATKGFSEEIGRGAGGTVYKGVLEDNQVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLICMLGYCAEGKHRLLVYEYMENGSLAQNLSSDSNVLGWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYKPKVGDFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGVQITELEAESPHHERLVTWVREKRMKGSENGSSWVDQIVDPALGSNYDMNEVEILATVALECVEEEKNVRPSMSRVAEKLQSHMHTIVDVFNKE 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01637 825 CDD STKc_IRAK 534 812 - -
Vimu9g01637 825 Gene3D Transferase(Phosphotransferase) domain 1 604 823 - -
Vimu9g01637 825 Gene3D - 24 147 IPR036426 -
Vimu9g01637 825 Pfam S-locus glycoprotein domain 255 319 IPR000858 GO:0048544
Vimu9g01637 825 Gene3D Phosphorylase Kinase; domain 1 502 603 - -
Vimu9g01637 825 FunFam Serine/threonine-protein kinase 604 818 - -
Vimu9g01637 825 Pfam D-mannose binding lectin 70 160 IPR001480 -
Vimu9g01637 825 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
Vimu9g01637 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 203 IPR036426 -
Vimu9g01637 825 SMART serkin_6 528 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01637 825 Pfam Protein kinase domain 531 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01637 825 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Vimu9g01637 825 CDD B_lectin 40 149 IPR001480 -
Vimu9g01637 825 SMART blect_4 29 149 IPR001480 -
Vimu9g01637 825 PIRSF SRK 1 822 IPR024171 GO:0004674
Vimu9g01637 825 SUPERFAMILY Protein kinase-like (PK-like) 512 811 IPR011009 -
Vimu9g01637 825 PANTHER OS07G0415500 PROTEIN 9 815 - -
Vimu9g01637 825 ProSiteProfiles Protein kinase domain profile. 528 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01637 825 FunFam S-receptor-like serine/threonine-protein kinase 499 603 - -
Vimu9g01637 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01637 Vimu-Chr9 25526084 25528671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01637 518 823 Trihelix Transcription Factor Family AT5G38560 43.042 5.95e-71 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu9g01637 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01637 - - gmx:100808940 1341.64