Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01620 ATGGATCAAAGAAAGGTGTTGGAGGAGCTTCTGAGAGGTTATGAATCTGCTACTCAACTTCGAGTAGTGATGAATGAAAAAGATGAATCAGAAATAAGAACCCTTCAAAGTCTTGCCAAGAACGTGCTTAGATCCTTCACCAACACCCTCTTCCTCTTTGACTCTCATCTTCTCTCTCCCACCAAATCTCAGGACTCTCAAGAAAGCTGCAAGACTTTCAACAGAAGAGGCTGCTACAAGAGAAAAAGAAGTAAAGAAGAATGGGAGAAGGTTTCAGAAGCTCCATCAGTTGATGGCCATCACTGGAGAAAGTATGGCCAAAAAGAGATCCTCAAAGCCAAATACTCAAGGAACTATTACAGGTGCACTCACAAGTATGATCAGAATTGTCAAGCAACAAAACAAGTGCAAAGAATTCAAGAGAACCCTCCCTTATACAAGACCACATATTTTGGCCACCACACATGCAATGACTTGCTGAGTTCTGAAATCATACTAGATTCCATTGATTCTCCTTCTGACACTTCCATACTGCTAAGTTTTAACAACAGCTTCCCAGCTCCAACCAAGCAAGAATGTCCCTTTTTATCATCATCATCATCATCATCTATCTATCCCTCACCATCACTGATGATCACAGAGGAGACAATTCCATCATGTTATGATGATTACATGCTATCCCCACAACCCACTTTGGATGATTATTCAATGCACAATAATGTTACTCCACCACTCGATCACTGGGATGATATGTCTTCTGCCTTCTCTGATTTTGACATTGACGACATCAAACGTTGGTTGAATTTGGATGATTGA 816 0.4081 MDQRKVLEELLRGYESATQLRVVMNEKDESEIRTLQSLAKNVLRSFTNTLFLFDSHLLSPTKSQDSQESCKTFNRRGCYKRKRSKEEWEKVSEAPSVDGHHWRKYGQKEILKAKYSRNYYRCTHKYDQNCQATKQVQRIQENPPLYKTTYFGHHTCNDLLSSEIILDSIDSPSDTSILLSFNNSFPAPTKQECPFLSSSSSSSIYPSPSLMITEETIPSCYDDYMLSPQPTLDDYSMHNNVTPPLDHWDDMSSAFSDFDIDDIKRWLNLDD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01620 271 ProSiteProfiles WRKY domain profile. 91 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g01620 271 Gene3D WRKY domain 82 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g01620 271 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 183 IPR044810 GO:0003700
Vimu9g01620 271 SMART WRKY_cls 96 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g01620 271 SUPERFAMILY WRKY DNA-binding domain 94 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g01620 271 Pfam WRKY DNA -binding domain 98 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01620 Vimu-Chr9 25428822 25430178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01620 5 157 WRKY Transcription Factor Family AT3G56400 38.068 4.44e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu9g01620 WRKY 7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01620 - - var:108346831 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00192 6 2507576 2508916 Vimu9g01620 9 25428822 25430178 PCT