Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01618 ATGGAACGTAATGCTCCAAACATTCCCCCCTCTGAAACTTCCCATTCTCACCGCAGCAGGGTTCGTCCCAAAAGCAGCGTCCAATTTGATGATAACACCCTCATTCATGATCATAGCGGCAACGTCATCTATGTCAATGATCCCACCAAGACTAATGAAAAGTATGAGTTTTGTGGGAATGACATCCGAACCAGCAGATACACTCTTCTTAACTTCTTGCCCAAGAATCTGTTCATTCAATTCCACCGGGTTGCTTATCTTTATTTCCTTGCCATTGCTGCCCTGAATCAGCTTCCTCCACTAGCTGTTTTCGGCCGAACCGTGTCCCTTTTCCCCCTATTGTTTGTGCTTTGCGTCACTGCTATCAAGGATGCCTACGAGGATTGGCGCAGGCACAGGTCAGATTGCTATGAAAACAATCGTGAGTGTCTGGTTCTTCAATCGGCTCAGTTCCGTTCCAAGAGATGGAAAAATGTGCAGGCTGGTGATGTGATTAAAATCTTAGCCGATGAGATGATTCCTGCTGACATGGTCTTGCTGGGGACAAGCGATCCTAGTGGGGTTGCTTATATTCAAACAATGAATTTGGATGGTGAATCGAATTTGAAGACACGGTTTGCCAAGCAAGAAACAGTTTCAGCGTTTTCGCAAGATGCTTGTGCTGTCTCTGGGGTTATTAGATGTGAACCACCTAATCGGAACATCTATGAGTTCACTGCCACCATGGAGTTAAATGGCCATAAGATTCCCCTTAACCAGTCAAACATTGTTCTGCGTGGTTGCATGCTGAAGAACACGGATTGGATAATTGGTGTTGTGGTCTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAAACTTTGTGGTTGTCAGTTTTTCTTTTTATTATGTGCGCAGTTGTTTCCCTAGGGATGGGTCGCTGGCTGGTACGCCATGACCATGAGCTCGATACCTTGCCTTACTACAGAAAAAAATTCTTCAACAAAGGGCCAAATGAGGGAAGGAAATACAGGTACTATGGGATACCAATGGAAACTTTCTTCTCCTTTTTGAGCTCCATTATTGTGTTTCAGATAATGATACCAATATCTCTATATATCACAATGGAGTTAGTTCGATTGGGTCAGTCATACTTCATGATAGAGGACAAGGATATGTACGATTCTAAATCTGGATCAAGGTTCCAGTGTAGATCATTTAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCTGACAAGACAGGAACTCTAACAGAAAACAAAATGGAGTTTCAGAGAGCCAGTATTCATGGAAAGAGCTACGGGAGCTCCTTGCATACAGATGATGAAAGTACAGAAGCAGCAGCCAATAACAGTAAACGAAAATGGAAACTCAAATCTGAAACTCCTGTTGATTCTGAACTAATGGCATTGTTGCGGAAAGACTCTAATTTAGATGAAAGAATTGCTGCTCATGAGTTTTTCCTCACATTGGCTGCTTGTAATACTGTGATCCCCATTATCAGTAGTGGTAAAGTTTCCAGTTGTGGAAAAGCTGAATCAAATCATGAAATAGAAGGTATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTAGTTTCAGCTGCATCTGCATATGGATATACACTATTTGAGAGAACATCTGGAAATGTTGTTCTTGATGTGAATGGTGAGAAACTCAGGTTGGATGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCAGTTATTCTCCGGTTTCCTGATAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACAGTTCAATGTTTAGCATTTTAGCTCCTGACACTGAAGGAAACAACGGAATACAGCATGACACTCAGAGTCACCTAAGTGAATATTCTATGGAAGGTTTACGAACTCTTGTAGTTGGCTCCAGGGATCTTTCAGATGCTGAATTTGAGGAGTGGCAAAACATGTATGAAGATGCAAGCACTTCATTGACTGATCGAGCTGCAAAACTACGTCAAACAGCGGCTCTGATAGAATGCAACCTAAAGCTTCTCGGAGCAACTGGAATTGAGGACAAGCTGCAGGAGGGTGTGCCAGAAGCCATTGAGTCCATGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACCGGTGATAAGCAGGAGACTGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTAGAGACATGCAGAAGATCATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAAGCTCTTGACTGATGCCATAGCAAAGTATGGATTGAAATCTTCAAGTATAGAACATCAGAATCTGAAGTGCAAAACTGATTCTAGACCTGGTTGCCCTGATATTCACGATAATACAAAATCATTGGGCTTGCCCAAGTCAAATGCAGGGAAAAAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGAACCAGTTTAGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGGCAAGATTAACCTTGCTCACTTGA 2559 0.424 MERNAPNIPPSETSHSHRSRVRPKSSVQFDDNTLIHDHSGNVIYVNDPTKTNEKYEFCGNDIRTSRYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDAYEDWRRHRSDCYENNRECLVLQSAQFRSKRWKNVQAGDVIKILADEMIPADMVLLGTSDPSGVAYIQTMNLDGESNLKTRFAKQETVSAFSQDACAVSGVIRCEPPNRNIYEFTATMELNGHKIPLNQSNIVLRGCMLKNTDWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETLWLSVFLFIMCAVVSLGMGRWLVRHDHELDTLPYYRKKFFNKGPNEGRKYRYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDKDMYDSKSGSRFQCRSFNINEDLGQIRYVFSDKTGTLTENKMEFQRASIHGKSYGSSLHTDDESTEAAANNSKRKWKLKSETPVDSELMALLRKDSNLDERIAAHEFFLTLAACNTVIPIISSGKVSSCGKAESNHEIEGIDYQGESPDEQALVSAASAYGYTLFERTSGNVVLDVNGEKLRLDVLGLHEFDSVRKRMSVILRFPDNVVKVLVKGADSSMFSILAPDTEGNNGIQHDTQSHLSEYSMEGLRTLVVGSRDLSDAEFEEWQNMYEDASTSLTDRAAKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESMRQAGIKVWVLTGDKQETAISIGLSCKLLSRDMQKIIINGTSEVECRKLLTDAIAKYGLKSSSIEHQNLKCKTDSRPGCPDIHDNTKSLGLPKSNAGKKEGTTAPLALIIDGTSLVYILEKELESEARLTLLT 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01618 852 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 844 - -
Vimu9g01618 852 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Vimu9g01618 852 SUPERFAMILY Calcium ATPase, transduction domain A 140 282 IPR008250 -
Vimu9g01618 852 Pfam Cation transport ATPase (P-type) 535 621 - -
Vimu9g01618 852 NCBIfam HAD-IC family P-type ATPase 695 750 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu9g01618 852 NCBIfam HAD-IC family P-type ATPase 363 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu9g01618 852 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 713 IPR023299 GO:0000166
Vimu9g01618 852 Gene3D - 697 850 IPR023214 -
Vimu9g01618 852 Pfam E1-E2 ATPase 141 388 - -
Vimu9g01618 852 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 424 IPR023298 -
Vimu9g01618 852 Gene3D - 442 505 IPR023299 GO:0000166
Vimu9g01618 852 Gene3D - 542 676 IPR023299 GO:0000166
Vimu9g01618 852 MobiDBLite consensus disorder prediction 1 26 - -
Vimu9g01618 852 NCBIfam phospholipid-translocating P-type ATPase 57 845 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu9g01618 852 SUPERFAMILY HAD-like 418 749 IPR036412 -
Vimu9g01618 852 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Vimu9g01618 852 Gene3D - 120 286 - -
Vimu9g01618 852 FunFam Phospholipid-transporting ATPase 115 285 - -
Vimu9g01618 852 FunFam Phospholipid-transporting ATPase 542 677 - -
Vimu9g01618 852 Gene3D - 427 441 IPR023214 -
Vimu9g01618 852 PRINTS P-type cation-transporting ATPase superfamily signature 723 733 - -
Vimu9g01618 852 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01618 Vimu-Chr9 25419437 25422754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01618 35 843 Primary Pumps ATPases AT5G04930 54.141 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01618 K14802 - gmx:100788740 1418.68