Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01617 ATGGCTTCTCTGCTCCCTCCAACTCCAACTGCTACTTCCACGCTCAAACACAGCCAAATGGCTTCTCCCATGAAGCTCACCACTCCAAACAATGCTTCTTTCTTGCAAAACTCAAACCACCGTTTGAAGAGCAACTCTGCAAAGTGCCATGCAGTGTTTGGTGATGTGGCCAAAGGGTTGGTGGAGAACAGTGTTGGCATGGACCAGTTTCAAAGTATCCAATCAGGAATAGTGCAGTTGGAAAGAGTGACTGAAGGGTTATCTGACATGCAGAAGTGGGGGGTTCTCGTGTTTGGTGGGTTGACTTGGATTTACCTGACTGCAAGGCCAGGTGTGCTTGTTGGTGCCATTGATGCATACCTTTTGGCCCCTCTTCAACTGGGGTTGGACAATTTGGTTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGAAAAGCTTGGTGAAGGGTCTTTTGGTGTTGTCTATTCGGGTGTTTTGGTTCCGAAGAATGGGAATGGGAATAATGGGAGTGTTGATGTGGTGCAGAAGAGGGGGAGAGGCAAGACAACGCAGGTGGAACCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTCGAAATTCAAGGCGCTGCGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCTCCCGAAACATGTGCTGACTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGGGATCGTACTCTTGATGATTACATGAAGGATCGAAACTTTCCTTCAAACTTGGAATCTGTGATGTTTGGACGTGTTCTGCAAGGTGTTGACTCTTCAAAACGAAATGCTTTGATCATCAAACAAATAATGCGCCAGATCTTTACATCTCTGAGGAAAATTCATGATAATGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACTTGCGGATTGGAAAGAATTATGTTCCCAACCGTACCCTTTTTGATCCTAACTATTGCCCCCCAGAATTATATGTCCTCCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCTCCAATCCTTTGGCAGTTAAACAGCCCTGATTTGTTTGATACGTATTCAGCTGGGATTGTACTTCTTCAAATGGCAATACCATCCTTAAGGTCTTCTTCTGCTTTGAAGAATTTCAACTTGGAACTAAAAAACTGTGGATATGATCTGAAAAAATGGAGGGACTATACTCGCAGCAGGCCTGACTTCCAAATTCTAGATGGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAGGCTTGTATCTGAGAGAGGTTCCCTAAGAAGAGGACGTTTATCTGCTGCTACAGCTCTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTGCTTTCAAAACTAAGCTTAAGCAGAAAGTGA 1530 0.4425 MASLLPPTPTATSTLKHSQMASPMKLTTPNNASFLQNSNHRLKSNSAKCHAVFGDVAKGLVENSVGMDQFQSIQSGIVQLERVTEGLSDMQKWGVLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLVGRRNLKRSDFVVGEKLGEGSFGVVYSGVLVPKNGNGNNGSVDVVQKRGRGKTTQVEPKSKDKVILKKVKVEIQGAAEFGDYEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLDDYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIFTSLRKIHDNGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLFDPNYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDTYSAGIVLLQMAIPSLRSSSALKNFNLELKNCGYDLKKWRDYTRSRPDFQILDGESGRGWDLATRLVSERGSLRRGRLSAATALRHPYFLLGGDQAAAVLSKLSLSRK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01617 509 SUPERFAMILY Protein kinase-like (PK-like) 139 491 IPR011009 -
Vimu9g01617 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vimu9g01617 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01617 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 509 - -
Vimu9g01617 509 SMART serkin_6 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01617 509 MobiDBLite consensus disorder prediction 1 22 - -
Vimu9g01617 509 Gene3D Transferase(Phosphotransferase) domain 1 288 492 - -
Vimu9g01617 509 Gene3D Phosphorylase Kinase; domain 1 131 257 - -
Vimu9g01617 509 ProSiteProfiles Protein kinase domain profile. 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01617 Vimu-Chr9 25415640 25418001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01617 167 370 MAP Kinase Kinase Gene Family AT4G29810 24.878 1.35e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vimu9g01617 Pkinase 2.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01617 - - gmx:100788727 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00197 6 2562431 2565085 Vimu9g01617 9 25415640 25418001 PCT