Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01595 ATGGGAGGCGAAGGAAGGGCCGCGGTGAAGAAGAAGAAGAACGCAAAATCTGGGGGCTTCGAGTCACTGGGTCTGAGTCCCAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTTCCCACCCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCGGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCTGCCTTTCTCGTCCCCATGATTCAGCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCTCCCACTAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTATCAGTTTGTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCATCATTTGTCGGAAGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTACTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACTAAGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACCCCGCCCTGCTGTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGTGACATGGATCAGGATGCTCGAAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATCGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCGAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGGACTGGTACCGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGCTCCTGCAGGATATGGATGGTGTAATGTCTAGATGTGACCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTTTTTCAGACAGAGTCAGGGAAGTTATGGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCTAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGGGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCATTTTGGAAGCCGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCCGGACAATGGGGTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAATATGGAAAAGGAGGAAATCGAATCAGAACTCAATCCTTCCATGGAAAAAGGAAGAAAAGCAGCACATGGTTCTAAGAGAAAGCCCCAATGTTTCAAGGATGAAGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCCGCTGTCCTTGATCTAGTCGCAGATGATGGTGCTGGTATTCACAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAACGGAAAGATAAAAACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAACGTTCACATGGTAAGATATCACTTAGAGGGACAAACGACGGTGATCCTCAGGAATCGACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTCAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGCAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGGAAAGGCAAATAG 2334 0.4602 MGGEGRAAVKKKKNAKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIQRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEELLQDMDGVMSRCDQAMANRETIYGRFPQKVIDLFSDRVREVMDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWGDVMKRKRAIHENIINLVHEQQQSKDNMEKEEIESELNPSMEKGRKAAHGSKRKPQCFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIHKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDPQESTSLAGSYQRGRRNFRGSKKQHSMPNAHVRSEIKDMDQIRKERQQKANRTSYIKSKSTKGKKFGKNGKRRKGK 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01595 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vimu9g01595 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Vimu9g01595 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vimu9g01595 777 MobiDBLite consensus disorder prediction 551 574 - -
Vimu9g01595 777 CDD SF2_C_DEAD 244 365 - -
Vimu9g01595 777 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vimu9g01595 777 MobiDBLite consensus disorder prediction 547 583 - -
Vimu9g01595 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Vimu9g01595 777 SMART ultradead3 37 244 IPR014001 -
Vimu9g01595 777 SMART helicmild6 275 356 IPR001650 -
Vimu9g01595 777 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 690 - -
Vimu9g01595 777 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vimu9g01595 777 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vimu9g01595 777 CDD DEADc_DDX54 18 223 IPR033517 -
Vimu9g01595 777 Gene3D - 237 461 IPR027417 -
Vimu9g01595 777 Gene3D - 4 225 IPR027417 -
Vimu9g01595 777 MobiDBLite consensus disorder prediction 759 777 - -
Vimu9g01595 777 Coils Coil 539 559 - -
Vimu9g01595 777 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vimu9g01595 777 MobiDBLite consensus disorder prediction 729 753 - -
Vimu9g01595 777 MobiDBLite consensus disorder prediction 698 713 - -
Vimu9g01595 777 MobiDBLite consensus disorder prediction 689 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01595 Vimu-Chr9 25280163 25285077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01595 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.202 1.42e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01595 K14808 - gmx:100806274 1381.31