Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01564 ATGGCTCCAGGCACATACTTCAACTGGGACACTGTTCAAATTCCCAGTTCAGAAACAAACACCTTCCACATGCTTGAAGAAGAAGTAGCAACACCAAACCTTCAACACCTTTTCTCCTACTACGATCAAAATGTTTTTCTTCCAACCGCTTCTTTTGAGAACTACATTGACCCAACTGGTGCTTCTCTTCACCCTTCAGATATTGACACTTCTCTCTATGATCCTTCCATTTCCTTTGCTCATTCTAACATCTTTCCAACTTCTCAACAAGATACTCTTCTCCCATCTCCCAAACGCCAAAAATGCTGCTGTGAAAGTAAAGTGCAAAAACTTACTGCACAAACTGCCCTGCCATCCAGTTTATACACAGACGAATTTGTTGTGCCTTATGATAATTTCTACTCTTCACACATTGAGGAACTGCCACAACAAATATCAGTTGAGTTTTCACAATTTGATAGTACCTGTGAGGATCTTAAGTGTGTGAAAAAAGAATCGGAGAAAACAATATCTCCCCAAAGCTTAGCAGCACGAGAGAGGAGAAGAAAGATCAGTGAGAAGACGCAGCAACTTGGAAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCTGAAATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTAAGTTGCTTGAACTCACAAAATCACTTGAGGAAGATAACGCAGAAACTCCTTCTGAAATGCTGCACTCACTGGTTGTTTCTTCCTTTGTACAAGAGAAGTTATATACAGAGGAAATGTGTTTTGTGCCTAAAGAAACTGTGGCATTTTTAAAAGCTTGGCAAAGCATTTGTGGAGGAGAAGGTATGGCAACTCTAGTCATACCTGCAAACTATCGATTCCTTCTGTCACCCTTAATGCTAAAGGGTCCTTGCCATGCCTCAAATATTCAAATTCAGATCCAGGGGAAAGTAATTGCAGCTGAGAAGAATGCATGGGCATCATATAAGTATACTTGGATTTTGATCACAAATGTAAATGGTCTGACAGTGGATGGAAGTGGAGGATCGCTGGATGGCTTCGGTTCTTCATGGTGGTCATGCAGAAACTGTCCACGTCCATCGGTCATTACTTTCAATTCATGCAATGGTCTTAGTGTTAGCTCCTTGAACATCATTAACAGTCCAAAAGCTCACATAAACATAAACAATTGTGTCGGAGCCACATTCTCTGCTATCAGTATTCAGTCTCCCGGTGACACTCACAACACTGATGGAATTGCTGTTTATGGTTCAAAAAATATCTGGATCAAAGATTCTACTATAGCATGTGGTGATGATTGCATTGCGATCAGTGGTGGCTCCTCTTATGTCAATGTTACTGGGAGTGCTTGTGGACCAGGCCATGGAATAAGCCTGGGAAATGGCAATAGTAACACAGTGGAACAAGTTCATGTACAAAATTGTAACTTCACCAATACACAAAATGGAGCAAGAATTAAGACATATGCGGATGGATCAGGTTATGCAAGAGAAATTAGATTTGAGGAAATTACATTGATACAAACTCGAAACCCAATAATTATTGACCAATTCTACACTAACAAAGGCGTATCTTTAAAGAATGGAGGAGTTGAAGTGAGAGGAATAACATTTCGTGGATTTCATGGAACAAGTATGACTGGTGAAGCTATTACCTTAAATTGTAGTCCACAAGGTTGTTTCAACATTACATTGGATCAAATTAACATTGCCTCTTCTCAACAAGGAAAACCAGCTTCCTGTTCTTGCAAAAATGCCCACGGAACAGCCACATCTTCTGTTCCAAGTTGTCCTTGCTTATTGCCATGA 1830 0.4049 MAPGTYFNWDTVQIPSSETNTFHMLEEEVATPNLQHLFSYYDQNVFLPTASFENYIDPTGASLHPSDIDTSLYDPSISFAHSNIFPTSQQDTLLPSPKRQKCCCESKVQKLTAQTALPSSLYTDEFVVPYDNFYSSHIEELPQQISVEFSQFDSTCEDLKCVKKESEKTISPQSLAARERRRKISEKTQQLGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVKLLELTKSLEEDNAETPSEMLHSLVVSSFVQEKLYTEEMCFVPKETVAFLKAWQSICGGEGMATLVIPANYRFLLSPLMLKGPCHASNIQIQIQGKVIAAEKNAWASYKYTWILITNVNGLTVDGSGGSLDGFGSSWWSCRNCPRPSVITFNSCNGLSVSSLNIINSPKAHININNCVGATFSAISIQSPGDTHNTDGIAVYGSKNIWIKDSTIACGDDCIAISGGSSYVNVTGSACGPGHGISLGNGNSNTVEQVHVQNCNFTNTQNGARIKTYADGSGYAREIRFEEITLIQTRNPIIIDQFYTNKGVSLKNGGVEVRGITFRGFHGTSMTGEAITLNCSPQGCFNITLDQINIASSQQGKPASCSCKNAHGTATSSVPSCPCLLP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01564 609 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 227 IPR036638 GO:0046983
Vimu9g01564 609 SMART finulus 174 223 IPR011598 GO:0046983
Vimu9g01564 609 Gene3D - 168 239 IPR036638 GO:0046983
Vimu9g01564 609 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vimu9g01564 609 SUPERFAMILY Pectin lyase-like 267 607 IPR011050 -
Vimu9g01564 609 SMART pbh1 535 562 IPR006626 -
Vimu9g01564 609 SMART pbh1 425 446 IPR006626 -
Vimu9g01564 609 SMART pbh1 474 495 IPR006626 -
Vimu9g01564 609 SMART pbh1 398 424 IPR006626 -
Vimu9g01564 609 PANTHER - 266 596 - -
Vimu9g01564 609 Pfam Glycosyl hydrolases family 28 278 596 IPR000743 GO:0004650|GO:0005975
Vimu9g01564 609 Pfam Helix-loop-helix DNA-binding domain 178 218 IPR011598 GO:0046983
Vimu9g01564 609 Gene3D - 264 604 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01564 Vimu-Chr9 24861364 24867687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01564 266 604 Glycoside Hydrolase AT5G17200 43.052 1.04e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01564 Glyco_hydro_28 5.1e-74 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01564 K01184 - gmx:100801217 459.144