Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01562 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGATGCTATTTCACAAGCTCGATTCTCATCAAGTTCTGGGCTTCTTTCGTGGGAAAAATCTTGATCAGAAGCTACTGAAAAAGTTGAAGAGGAAGCTGATGGACGTCAACTCTGTGATAGATGATGCAGAACAAAAGCAGTTGAGTGGTATCGATAGGTGGGTTGTGAGAACCGGTCGGCAAGTCAGTAAGCGAATTACCGGACGGTCTATCATCAGTAGAAGAACCGAGCGGTATATCATTAGCTGTGGTGCCGAGCGATTTGTTGAACAGGTCGGCAAGGATCTGATATTGTTGAGGTGTGATTTGAATGGTCTCGGTAGAAGAATGATCAGGATCCAAGCCGTTCGGTTGAGTGGCATCACGGGCGATCTTTCGATTGTTGTTGTTGGTGGTTTTTGCATTTCGATGATCTTGGTTTGGGAAACCATGTTTCTTGAAGCAAGTGGTTTCTTGATGACCAACCCGATTGCAACCAGTTCCAGCAAGGTACACAGTTTTGAATCCAATATCATAGCACTGCTAGATGATCTAGAATCTCTTTTGAACCAAAACATTGTTAAAGATTTCAAAATTTATAGTGGCGTAAGATCTGGGTTGGGTAATAAGGTGTCGGAGAAAAAAATTGAATCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGTAGAGATGAGGACAAAGAAATGATCTTTACTTGGCTGAGATCTGACGCTAATGATAATAAACTGTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAGATAGAAGAAGCTAAATTTGATGAAAAGGCTTGGGTTTGCGTTTCTGATGCATTTGATGTTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACTAACTCAACAGATGACAGTGGCGACCTAGAAACGATTCATGGAAAATTGACAAAAAGGTTGTCGGGAAGGAAATTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACCGAAATCAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTCTAGTCACAACACGCATTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACTCCAACTAAAGCAATTAGACGAAGATCACAGCTGGCAAACTTTTGCTAAACATGCATTCCAAGATCAAGACTCTAAGTTGAAGTCTGAGTTAAAGGAGATTGGTATGAAGATAGTTAAAAAGTGCCAAGGATTGCCTCTGGCCCTTGAAACAATAGGATGTCTTTTACAGTTAAAGTCATCTGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTATCAATAGAAGATAGTAAAATCGTCCCTACTTTGTTTGACAAGGAGAGCTTAATTTTGTTATGGATGGCTCAAAATTTTCTACATTGCTCTCAACAAAGCAAGTCTCCAGAAGAAGTAGGTGAAGACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAACAAATAACTCGGTACAAGGAAACATATTTTGTCATGCACGACCTTCTCAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGTGTTGATGGTGAAAAAAGAGTATCAAGGAAAACCCGTCACTTATCATATGTAAGAGATCCTATTCAAGATTATACGAGTTTATATGATGCTAAAGGGTTACGGACATTTATAACCTTTAAAGGGTTACCGACATTTACCTTTTTGCGGCATTATGCGATGTCAGAGTTAATCTCCAATTTTAAGTTCTTACGGGTCTTATCATGGCGTTGGTGTATTAAGGTGCCTGACACTATAGGCGATCTTATACATCTCCGTTCGTTAGACCTTTCGGGTAGCTCCATAGAGAGCCTTCCTGACTCAATCTGTTTACTCTATAACTTGCAAGTATTGAAACTAAATAATTGTTTCGGATTGAAGGAGCTGCCCTTAACTTTGCATGAGCTCACCAATTTGCGCCGCCTTGAACTTAAGGGAACTACTTTAACAAAGGCTCCACTCCGTTTAGAAAAGTTGAAGAATCTTCACGTGTGGATGGGCATCTTTAAGGTTGGCAAAAGTAGTGAGTTCAGTATTCAACAATTAGGAGAACTTAATCTTCATGGAGAGCTGTCGATTAGAAATCTTGAAAATATCGCAAATCCGTATGAGATGAATTTGAAAAATAAAACACATATTGTGAGTCTGAGTTTACAATGGAATTTGAAGCGGAACAATGAGGATTCATTAAAAGAAAGAGAAGTACTTGAGAATCTGCAACCTTCCAGACATTTGAAGCACTTGTCAATCGAGGGCTATGGTGGCACACAGTTTCCCCGTTATTTTTCTTGTAAATCTCTATCGAATGTTGTGTCTTTAAAGTTGTATCACTGTAAAAATTGTCTATGGTTGCCTTCCCTTGGACTTTTGACATTTCTGGAGGAGTTGAGAATTCATGGCCTTGATTGCATAGGAAGGGTAGATGCTGATTTCTACGGGAATAGCTCTTGTGCATTTGCATCCTTGAAAACGTTGAGCTTTGAAGATATGAAGGAATGGGAAGAATGGCAGTGCATGACGGGTGTCTTTCCAAGTCTTCAAAGTCTTTCTCTGACGAATTGTCCCAAGCTGAAAGAATTGCCAGACATACTTTGTCATTTAAAGAAACTACTTATAGAGAACTGCGGCCAAATTGGGGCTCCGATTACCAGGGCCGGAGAGATTGAATGTGTGAATATGAGGCCGTCTTCATTTGATATGACTAGGCCGCCCCACATTCCCATTAGCCATTGGTACCATTCCCTTGTAGAATTGGTTATCAGATATGGTTGTGGCTCTCTCACTACCTTTCCTCTAGATTTGTTCCCAAAACTCGGCGAGCTTTCTTTAATACAGTGTTGCAATCTACGGATGATATCGCAGGAGCACCCTCATAATCATTTGAAGTATTTGATGATTCGACATTGCCCTGAATTTGAATCATTTCCCAATGAAGGATTATTTGCACCTCAGCTAGTGTCATTTACAATTTTTGGATTGGGGAAATTGAAGTCAATGCCTAAATGCATGTATGCCCTTCTTCCATCTCTTAATCGTCTGTACATACGCAATTGTCCAGCGCTGGAGTCGTCCGAGGAATGTTTGGCATCAAACATAAAAGAAATGCATCTCTTGAATTGCTCCAAACTTGTGGCCTCACTAAAGGGCGTTTGGGGAACCAACCCTTCCTTAAAAGACTTGTATATTAGCTTTGTGGATTTGGAGTGTTTTCCGGGTGAAGGTTTGCTCCCACTTTCTCTTGTTAAACTAGAGATATATAATTGTCCAAATCTTAAGAAACTGGACTACAGGGGTCTCTGTCACCTCTCCTCTCTTCAGACATTGAGTTTTCGTTACTGTCCTATACTCCAATGCTTGCCAGAGGAGGGTCTGCCCAAATCCATTTCAGAACTCAAAATTGTAGGTTGTCGGTTGCTGAAACAGCGGTGCAAGAAAGAAGAAGGTGAAGACTGGGAAAAGATTGCTCACATTAAATCCATATATATATATTGA 3624 0.4029 MPVLETLGGALFGAVLQMLFHKLDSHQVLGFFRGKNLDQKLLKKLKRKLMDVNSVIDDAEQKQLSGIDRWVVRTGRQVSKRITGRSIISRRTERYIISCGAERFVEQVGKDLILLRCDLNGLGRRMIRIQAVRLSGITGDLSIVVVGGFCISMILVWETMFLEASGFLMTNPIATSSSKVHSFESNIIALLDDLESLLNQNIVKDFKIYSGVRSGLGNKVSEKKIESTSLVAEEVIYGRDEDKEMIFTWLRSDANDNKLSILSIVGMGGMGKTTLAQHVYNDPKIEEAKFDEKAWVCVSDAFDVLRVSKAIIGAFTNSTDDSGDLETIHGKLTKRLSGRKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKILVTTRIHKVASIMQSTYILQLKQLDEDHSWQTFAKHAFQDQDSKLKSELKEIGMKIVKKCQGLPLALETIGCLLQLKSSVSEWEGVLTSEIWDLSIEDSKIVPTLFDKESLILLWMAQNFLHCSQQSKSPEEVGEDYFNDLVSRSFFKQITRYKETYFVMHDLLNDLAKYVSGEICYRLGVDGEKRVSRKTRHLSYVRDPIQDYTSLYDAKGLRTFITFKGLPTFTFLRHYAMSELISNFKFLRVLSWRWCIKVPDTIGDLIHLRSLDLSGSSIESLPDSICLLYNLQVLKLNNCFGLKELPLTLHELTNLRRLELKGTTLTKAPLRLEKLKNLHVWMGIFKVGKSSEFSIQQLGELNLHGELSIRNLENIANPYEMNLKNKTHIVSLSLQWNLKRNNEDSLKEREVLENLQPSRHLKHLSIEGYGGTQFPRYFSCKSLSNVVSLKLYHCKNCLWLPSLGLLTFLEELRIHGLDCIGRVDADFYGNSSCAFASLKTLSFEDMKEWEEWQCMTGVFPSLQSLSLTNCPKLKELPDILCHLKKLLIENCGQIGAPITRAGEIECVNMRPSSFDMTRPPHIPISHWYHSLVELVIRYGCGSLTTFPLDLFPKLGELSLIQCCNLRMISQEHPHNHLKYLMIRHCPEFESFPNEGLFAPQLVSFTIFGLGKLKSMPKCMYALLPSLNRLYIRNCPALESSEECLASNIKEMHLLNCSKLVASLKGVWGTNPSLKDLYISFVDLECFPGEGLLPLSLVKLEIYNCPNLKKLDYRGLCHLSSLQTLSFRYCPILQCLPEEGLPKSISELKIVGCRLLKQRCKKEEGEDWEKIAHIKSIYIY 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01562 1207 Gene3D Ribonuclease Inhibitor 949 1205 IPR032675 -
Vimu9g01562 1207 ProSiteProfiles Leucine-rich repeat profile. 635 656 IPR001611 GO:0005515
Vimu9g01562 1207 Gene3D - 216 391 IPR027417 -
Vimu9g01562 1207 Gene3D - 395 474 IPR042197 -
Vimu9g01562 1207 Gene3D Ribonuclease Inhibitor 717 922 IPR032675 -
Vimu9g01562 1207 PRINTS Disease resistance protein signature 335 349 - -
Vimu9g01562 1207 PRINTS Disease resistance protein signature 885 901 - -
Vimu9g01562 1207 PRINTS Disease resistance protein signature 261 276 - -
Vimu9g01562 1207 PRINTS Disease resistance protein signature 432 446 - -
Vimu9g01562 1207 PANTHER DISEASE RESISTANCE PROTEIN RP 42 993 IPR044974 GO:0006952
Vimu9g01562 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 474 IPR027417 -
Vimu9g01562 1207 SUPERFAMILY L domain-like 531 914 - -
Vimu9g01562 1207 SUPERFAMILY L domain-like 956 1199 - -
Vimu9g01562 1207 Gene3D Ribonuclease Inhibitor 571 710 IPR032675 -
Vimu9g01562 1207 Pfam NB-ARC domain 240 459 IPR002182 GO:0043531
Vimu9g01562 1207 FunFam Probable disease resistance protein At1g61300 219 389 - -
Vimu9g01562 1207 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01562 Vimu-Chr9 24835978 24844735 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01562 262 833 WRKY Transcription Factor Family AT5G45050 23.852 5.14e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01562 - - vun:114168932 1338.17