Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01560 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGTTGTTCTTCAGATGCTATTTGACAAGCTCGATTCTCATCAAGTTCTAGGCTTCTTTCAAGTTACTAAAAAAGTTGAAGAGGAAGCTGATGGACGTCATTCTGTGATAGATGATGCAGAACAAAAACAGTTTACTAATTCATTGGTCAAAGAATGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAGGATCTGCTCGACCAAATAGAATGTGAATTCTCCAAGACTAAGTTGGAAGCTGAATTCCATACCAGTTCTAGCAAGGTACACAATTTTGAATCCAAGATCATAGCACTCCTAGATGATCTAGAATCTCTTTTCAACCAAAACATTGTTAAAGATTTCAAAATTTATACTGGCGTCAGATCTGGGTTGGGTGGTAATAAGTCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGCAGAGACGAGGACAAAGAAATGATCTTTAATTGGCTGAGATCTAACACTAATGATAATAAGCTGTCAATACTTTCTATTGTGGGTATGGATGGGATGGGTAAAACCACACTTGCTCAACATGTATACAATGATCCAAAGACAGAGGAAGCTAAATTTGATGAAAAGGCTTGGGTTTGCGTTTCTGAAACATTTGATGCCTTGAGAGTATCCAAAGCAATTATTGGAGATTTCACTAACTCAAGAGATGACAGTGGCGACCTAGAAATGATTCATGGAAAATTGAACAAGAGGTTGTCCGGAAGGAAATTTCTTCTGGTTCAGGATGATGTTTGGAACGAAGACCGAAATCAATGGAAAGCATTACAAACTCCTCTTATGTTTGGCGCTAAAGGAAGTAAAGTTATAGTCACAACACGCAGTCATAAAGTTGCTTCTATCATGCAGTCAACCTACATACACCAACTAAAGCAATTAGATGAAGATCACAGCTGGCAAACTTTTGCTAAACACTCATTCCATGATGAAAAGTTGAAGCCTGAGTTAAAGGAGATTGGTATGAAGATAGTTGAAAAGTGGCAAGGATTGCCTCTTGCCCTTGACACAATAGGATGTCTTTTACAGTTAAAGTCATCTGTTTCAGAATGGGAAGGTGTATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTTCCTAGTTTGTTGTTGAGCTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTCGCTTATTGTGCATTATTCCCCAAAGACCACAGGTTTGACAAGGAGAGCTTAATTTTGTTATGGATGGCTCAAAATTTTGTACATTGCTCTCAACAAAGCAAGCCTCCGGAAGAAGTAGGTGAAAACTACTTCAATGATCTGGTATCAAGGTCATTCTTTAAACAAATAACTTGGTACAACGAAACATATTTTGTTATGCACTACCTTCTCAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGTTACAGGTTAGGTGTTGATGGTGAAAAAATAGTATCAAGGAAAACCCGTCACATATACGTAAGTGGTCCTATTCAATATTATACGACTTTATGTGATGCTAAAGGGTTACGGACATTTATAGTCATTCGGAAGCGTTGTAAGATGCCTATTGAAGAGTTAATCTCCAACTTTAAATTTTTACGGGTGCCTGACACTATAGGCGATCTTATACATCTCCGTTCGTTAGACCTTTCGGGTACCGACATAGAGAGACTTACTGACTCAATCTGTTCACTTTATAACTTGCAAGAATTGAAACTAAACAATTGTGTCAAATTGAAGGAGCTGCCCTTTACTTTGCATGCGCTCACCAATTTGCGCCTTATGCATGCTACAAGACAGAGAGCTGTGGATCATCTGTTTGAACTTAAGATCCTCACAGGTACTATCAAATTGTGCAAACTCAACTGA 1917 0.3839 MPVLETLGGALFGVVLQMLFDKLDSHQVLGFFQVTKKVEEEADGRHSVIDDAEQKQFTNSLVKEWLDEVRDVLYDAEDLLDQIECEFSKTKLEAEFHTSSSKVHNFESKIIALLDDLESLFNQNIVKDFKIYTGVRSGLGGNKSTSLVAEEVIYGRDEDKEMIFNWLRSNTNDNKLSILSIVGMDGMGKTTLAQHVYNDPKTEEAKFDEKAWVCVSETFDALRVSKAIIGDFTNSRDDSGDLEMIHGKLNKRLSGRKFLLVQDDVWNEDRNQWKALQTPLMFGAKGSKVIVTTRSHKVASIMQSTYIHQLKQLDEDHSWQTFAKHSFHDEKLKPELKEIGMKIVEKWQGLPLALDTIGCLLQLKSSVSEWEGVLTSEIWDLPIEDSKIVPSLLLSYYHLPSHLKRCFAYCALFPKDHRFDKESLILLWMAQNFVHCSQQSKPPEEVGENYFNDLVSRSFFKQITWYNETYFVMHYLLNDLAKYVSGEICYRLGVDGEKIVSRKTRHIYVSGPIQYYTTLCDAKGLRTFIVIRKRCKMPIEELISNFKFLRVPDTIGDLIHLRSLDLSGTDIERLTDSICSLYNLQELKLNNCVKLKELPFTLHALTNLRLMHATRQRAVDHLFELKILTGTIKLCKLN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01560 638 Pfam Rx N-terminal domain 13 97 IPR041118 -
Vimu9g01560 638 Gene3D Ribonuclease Inhibitor 514 636 IPR032675 -
Vimu9g01560 638 FunFam Probable disease resistance protein At1g61300 136 306 - -
Vimu9g01560 638 SUPERFAMILY L domain-like 472 614 - -
Vimu9g01560 638 Gene3D - 13 121 - -
Vimu9g01560 638 Gene3D - 142 308 IPR027417 -
Vimu9g01560 638 FunFam Probable disease resistance protein At1g63360 396 483 - -
Vimu9g01560 638 Gene3D - 312 395 IPR042197 -
Vimu9g01560 638 PANTHER DISEASE RESISTANCE PROTEIN RP 54 635 IPR044974 GO:0006952
Vimu9g01560 638 Pfam NB-ARC domain 157 374 IPR002182 GO:0043531
Vimu9g01560 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 410 IPR027417 -
Vimu9g01560 638 Coils Coil 66 86 - -
Vimu9g01560 638 Gene3D - 396 483 IPR036388 -
Vimu9g01560 638 PRINTS Disease resistance protein signature 178 193 - -
Vimu9g01560 638 PRINTS Disease resistance protein signature 252 266 - -
Vimu9g01560 638 PRINTS Disease resistance protein signature 347 361 - -
Vimu9g01560 638 PRINTS Disease resistance protein signature 579 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01560 Vimu-Chr9 24824327 24826332 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01560 176 371 WRKY Transcription Factor Family AT5G45050 25.112 1.57e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01560 - - var:108339252 1003.82