Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01556 ATGCCTGTCCTTGAAACACTAGGTGGTGCTCTGTTTGGTGCTATTCTTCAGATGCTGTTTGACAACCTGGATTCTCATCAATTCACTAATTCATTGGTCAAGGAATGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAGGATTTGCTGGAGCAAATACACTATGAATTCTCCAAGACTAAGTTAGAAGCCGAATTCCAGATCACTTCTAGCAAGGTACACAGTTTTGAATCCGATATCATAGCACTCCTAGATTATCTAGAATCTCTTCTGAACCGAAAGATTGTTACAGATTTCAAAATTTATAGTGGCATTAGATTTGGGTTGGGTAATAAGGTGTCGGAGAAAAAAGTTGAATCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGCAGAGAAGAGGACAAAGAAACGATCTTTACTTGGCTGAGATCTGACACTAGTGATAATAAGCTGTCAATACTTTCTATTGTGGGGATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAAACAGACGAAGCTAAATTTGATGAAAAGGCTTGGGTTTGCGTTTCTGATGTATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACTAACTCAAGAGATGACAGTGAAGACCTAGAAATGGTTCATGGAAAATTGAAAAAAAGATTGTCTGAAAGGAAGTTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACCGAAACCAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTATAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACACCAACTAAAGCAATTAGATGAAGATCACAGCTGGCAAACTTTTGCTAAACATGCATTTCAAGATCAAGACTCTAAGTTGAAGTCTGAGTTAAAGGAGATTGGTATGAAGATAGTTAAAAAGTGCCAAGGATTGCCTTTGGCCCTTGAAACAATAGGATGTCTTTTACGGTCAAAGTCATCTGTTACAGATTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTTCCTACTTTGTTGTTGAGCTATTACCATCTTCCTGCTCATCTCAAGAGATGTTTCGCTTATTGTGCATTATTCCCTAAAGACCATAAGCTTAACAAGGATAGCTTAATTTTCTTATGGATGGCTCAAAATTTTCTACATTGCTCTCAACAAAGCAAGTCTCCAGAAGAAGTAGGTGAAGACTACTTCAACGATCTAGTATCAAGGTTAGGTGTTGATGATGAAAAAAGAGTATCAGGAAAAATCCGTCATATGTCATATGTGGCTCCATAG 1374 0.3857 MPVLETLGGALFGAILQMLFDNLDSHQFTNSLVKEWLDEVRDVLYDAEDLLEQIHYEFSKTKLEAEFQITSSKVHSFESDIIALLDYLESLLNRKIVTDFKIYSGIRFGLGNKVSEKKVESTSLVAEEVIYGREEDKETIFTWLRSDTSDNKLSILSIVGMGGMGKTTLAQHVYNDPKTDEAKFDEKAWVCVSDVFDALRVSKAIIGAFTNSRDDSEDLEMVHGKLKKRLSERKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKIIVTTRSHKVASIMQSTYIHQLKQLDEDHSWQTFAKHAFQDQDSKLKSELKEIGMKIVKKCQGLPLALETIGCLLRSKSSVTDWEGVLTSEIWDLPIEDSKIVPTLLLSYYHLPAHLKRCFAYCALFPKDHKLNKDSLIFLWMAQNFLHCSQQSKSPEEVGEDYFNDLVSRLGVDDEKRVSGKIRHMSYVAP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01556 457 Gene3D - 375 453 IPR036388 -
Vimu9g01556 457 Gene3D - 14 92 - -
Vimu9g01556 457 Pfam Rx N-terminal domain 17 65 IPR041118 -
Vimu9g01556 457 Gene3D - 110 286 IPR027417 -
Vimu9g01556 457 PRINTS Disease resistance protein signature 155 170 - -
Vimu9g01556 457 PRINTS Disease resistance protein signature 229 243 - -
Vimu9g01556 457 PRINTS Disease resistance protein signature 326 340 - -
Vimu9g01556 457 Pfam NB-ARC domain 134 353 IPR002182 GO:0043531
Vimu9g01556 457 FunFam Probable disease resistance protein At1g61300 112 283 - -
Vimu9g01556 457 Gene3D - 289 374 IPR042197 -
Vimu9g01556 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 389 IPR027417 -
Vimu9g01556 457 PANTHER DISEASE RESISTANCE PROTEIN RP 35 436 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01556 Vimu-Chr9 24807598 24809374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01556 153 350 WRKY Transcription Factor Family AT5G45050 27.014 3.06e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01556 - - var:108339252 763.837