Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01532 ATGTTTGAGAAATCAATCTCAAAAATGAAGTTGATTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATTGGGTCAGGAAGAACAGGAACTGTTTACAAAGCTGTGCTTGGTGATGGAACAACACTTATGGTTAAGAGATTACAGGAATCTCAGTACACTGAAAAGGAATTCATGTCTGAGATGGGTACACTAGGGACTGTCAAACATCGCAATCTTGTTCCTCTTTTAGGCTTTTGCATGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAACATGCCAAATGGCAATCTCCATGACCAACTCCATCCTGCAGATGGTGTGAGCACCCTTGACTGGACTACGAGACTCAAAATTGCAATTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAACCCCCGAATCATCCACCGAAACATAAGCTCAAAGTGCATCTTGTTGGATGCAGAATTTGAGCCAAAAATTTCTGATTTCGGCCTTGCCAGACTGATGAACCCGATTGATACTCATTTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTGGGTTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCTACACCCAAGGGGGATGTTTATAGCTTTGGGACTGTTCTTCTTGAGTTGGTGACTGGTGAAAGACCCACCAATGTGGCTAAAGCTCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATCACAGAGCTAACAAACAATGGAAAACTCTATGACGCCATTGATGAATCATTAGTCAGCAAGGATGTTGACAGTGAGCTTTTCCAATTTCTGAAGATTGCATGCAACTGTGTTCTGCCAACTCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAGTTTTTAAGAGCCATTGGGGCTAGATACAATTTCACAACTGATGATGAGATATTGGTACCTACTGATAATGGTGATGCTGATAACATGGAGGAACTTATTGTAGCTCGGGAATGA 993 0.4169 MFEKSISKMKLIDLMKATNNFSNTNIIGSGRTGTVYKAVLGDGTTLMVKRLQESQYTEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERLLVYKNMPNGNLHDQLHPADGVSTLDWTTRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDAEFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWITELTNNGKLYDAIDESLVSKDVDSELFQFLKIACNCVLPTPKERPTMFEVYQFLRAIGARYNFTTDDEILVPTDNGDADNMEELIVARE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01532 330 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 298 - -
Vimu9g01532 330 Pfam Protein tyrosine and serine/threonine kinase 24 295 IPR001245 GO:0004672|GO:0006468
Vimu9g01532 330 ProSiteProfiles Protein kinase domain profile. 21 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01532 330 CDD STKc_IRAK 27 295 - -
Vimu9g01532 330 Gene3D Transferase(Phosphotransferase) domain 1 96 313 - -
Vimu9g01532 330 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 96 316 - -
Vimu9g01532 330 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 95 - -
Vimu9g01532 330 SUPERFAMILY Protein kinase-like (PK-like) 6 295 IPR011009 -
Vimu9g01532 330 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01532 Vimu-Chr9 24496965 24497957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01532 1 305 Receptor kinase-like Gene Family AT1G27190 54.248 2.41e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vimu9g01532 PK_Tyr_Ser-Thr 4.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01532 - - gsj:114405112 608.216