Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01528 ATGGAAGAACACGAAGAGAAAACCATCATCACCAAGTTCACGAAATCCAAATTTTTCTTTCCCAAAGTTATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGACGAAGAAAGGAAGCTTCTTAAACTTCAGAGAGTTAAGAAAGTGGTCAGTGAGATAAGAATTGTGCATGGAAACAAAACCAAAGGACACAACAAAAACATCAACAATACTACTGATTGTTGTTGTTGTTCGACCAAATACAAGAAAACCATGGAACAACACTACCAACAAGAAAAAACAGAGCAACAAGAAAAAACAGAGCCCAAGTTTCGCGGCGTGCGGCAACGGCCATGGGGGCGGTGGGCCGCCGAGATAAGAGACCCTTTCCAGCGGAAGCGAGTGTGGCTTGGAACCTTCGACACCGCGGAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATAAGCTTCAGAGGTGCTGATGCTGTCACGAATCTCATCAAACCGCCTCTGAAAGACTGTGAAAGTGTTGTTAAACCGAAGAGTTGTTGTGCATGCGCTTCACCCACTTCTGTTCTGCTGTTTCAGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACCTTCAAAGAAGAAGTGTTTGATGGGTTAAACTATGAAGTTGATAGTTTATTGTTTTCTGATCATGCTCTTTATGAGCAACCTCTTCCTACTGTGTTTTCTAACGTTGATGTGTCTTTGGATGAGGATCTTGAATCTTGTAAATGGGAT 768 0.4336 MEEHEEKTIITKFTKSKFFFPKVIRISATDHNATDSSSEEEDEERKLLKLQRVKKVVSEIRIVHGNKTKGHNKNINNTTDCCCCSTKYKKTMEQHYQQEKTEQQEKTEPKFRGVRQRPWGRWAAEIRDPFQRKRVWLGTFDTAEEAAMVYDRAAISFRGADAVTNLIKPPLKDCESVVKPKSCCACASPTSVLLFQPWMEPLSLEETFKEEVFDGLNYEVDSLLFSDHALYEQPLPTVFSNVDVSLDEDLESCKWD 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01528 256 CDD AP2 109 165 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Vimu9g01528 256 Pfam AP2 domain 109 159 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 195 - -
Vimu9g01528 256 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Vimu9g01528 256 Gene3D AP2/ERF domain 110 167 IPR036955 GO:0003700|GO:0006355
Vimu9g01528 256 FunFam Ethylene-responsive transcription factor 2 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01528 Vimu-Chr9 24459438 24460243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01528 5 214 AP2-EREBP Transcription Factor Family AT4G27950 40.084 2.19e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu9g01528 AP2 6.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01528 - - pvu:PHAVU_010G035200g 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01528 9 24459438 24460243 Vimu6g03952 6 39146396 39146770 PCT