Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01492 ATGGAACTTTGTGATCCATTTTCATTGAATGGTCATTTTCTTACTATTGTCTTATTAGTGGATTTGGAAGCTGTGGCAGAAACAGTTGAAAATTCTACTGATCAAATATCAGCAGCATTTGAAGGCAGTTCTATTGGGGAGCCAAATGTTGGTATGGAATTTGAGTCAGAGGAAGCTGCTAAGAACTTTTATGAGAAATATGCAAAACATGAAGGGTTTGTTGTTCGCCTTGATCGTTGCCATCGTTCTGAGGTTGACAACCGAATCATTTCACGCCGTTTTTCATGCAATAAGCAAGGTTTTCATGTGAGGGTTAGAAATAAAACCAAGCCTGTTCATAAACCAAGGACTAGCATAAGAGAAGGTTGTGAAGCCATGATGTTGGTTAAAGTTAATAAATGTGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAGCACAGTCATCTACTAAATGCTTCTGGTTCTCCTTCATATAGTAAAATGATTGAGTCAAAGGATAGGATAATTCAACAACTCACAAAGGAACTTGAGTACCGAGATCGATTATGTCAGCAATATCGCAGACAGCTATTCTCCCTTCTGGAGACTGTTGAGGAACAAACAGAAAGTTTATCAAAAAATGTTGAGCTTGTTGTTAACAATATAAGAAATCTTTAG 657 0.3744 MELCDPFSLNGHFLTIVLLVDLEAVAETVENSTDQISAAFEGSSIGEPNVGMEFESEEAAKNFYEKYAKHEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVNKCGKWVVTKFVKEHSHLLNASGSPSYSKMIESKDRIIQQLTKELEYRDRLCQQYRRQLFSLLETVEEQTESLSKNVELVVNNIRNL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01492 218 Coils Coil 194 214 - -
Vimu9g01492 218 Pfam FAR1 DNA-binding domain 62 151 IPR004330 -
Vimu9g01492 218 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 30 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01492 Vimu-Chr9 24078362 24080474 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu9g01492 FAR1 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01492 - - var:108347130 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03880 6 37816683 37824413 Vimu9g01492 9 24078362 24080474 PCT