Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01486 ATGAAGTTCAACATTGCCAATCCTACCACTGGCTGCCAGAAGAAACTCGAGATCGATGACGATCAGAAGCTGAGAGCATTTTGGGACAAGAGAATTTCACAGGAGGTCAGTGGGGATGCTCTGGGTGAGGAGTTTAAGGGATATGTGTTCAAAATCACCGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACACCTGGTCGAGTTCGTCTTTTGCTCCACAGAGGAACTCCTTGCTTCCGTGGGTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTTTCTGTTCTGAACTTGGTAATTGTGAAAAAGGGAGAAAGTGATTTACCAGGACTGACTGATGTTGAAAAGCCAAGAATGAGAGGTCCAAAGAGAGCATCCAAGATTCGGAAGCTGTTCAACCTGTCTAAAGAAGATGATGTGAGGAAGTATGTCAACACATACCGTCGAACCTTCACAACAAAAGCTGGTGTGTTGGGTTTTGTCAGGTGGGGCTATGGGGACTGCTTTTCTTGTAGTAAGCATGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGGCTTGTCACTCCATTGACCCTGCAAAGGAAGAGGGCAAGGATTGCTGATAAGAAGAAGAGAATTGCAAAGGCAAAATCAGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCAAAGAGGAGGTCCAAGCTTTCCAGTGTTTCTAAGCAGCCTGCCGCTGCATAG 807 0.4771 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGVLGFVRWGYGDCFSCSKHGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSVSKQPAAA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01486 268 Gene3D - 133 253 - -
Vimu9g01486 268 PANTHER 40S RIBOSOMAL PROTEIN S6 1 259 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu9g01486 268 MobiDBLite consensus disorder prediction 241 268 - -
Vimu9g01486 268 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu9g01486 268 MobiDBLite consensus disorder prediction 241 256 - -
Vimu9g01486 268 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu9g01486 268 Coils Coil 208 235 - -
Vimu9g01486 268 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vimu9g01486 268 PIRSF RPS6e 183 268 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vimu9g01486 268 PIRSF RPS6e 1 177 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01486 Vimu-Chr9 24003676 24007370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01486 63 268 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 79.126 4.82e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01486 K02991 - gmx:100800507 426.402