Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01485 ATGGTGTTGCTACACATTTTTGCTGTAGCCCAAACCAGAAGCAGTAAAATCATTGATCAATCTCTTCTGAAAGAAACCATCAAAGCCTCATGGGTAGTTTCATCTTCTGGTGAGATAAACCAAACCACAAGAAACATAACTGTTGGTGATTCACTTTTTGCAGAAACAACTAGCAGCAACTCCTCAACGTGGGTGGTTTCACGTCTTGGCCACTTTGCCTTTGGGTTTCTTCCACTTGAGGACACTGACCATTTCTTACTTTCCATTTGGTATGCTAAGATTCCTGGCAAGACTGTTGTTTGGTATGCCAATGGAGACACTCCTGCTCCAAAGGGGTCAAAGGTTGAACTCACTGGTGATGATGGATTAGTCCTCACTGCCCCAAATGGTGATCTGTTATGGAAAGCTAAGACCCTTAGTGGTAAAGTTCATCATGGGTTTTTAAAGGACAACGGAAACTTTGTTCTTGTGAATGAAAATCATCAAGGTGTGTGGGAGACGTTTAAGCATCCAAGGGACACCTTGTTGCCCACACAAACTCTTGAAAAAGGTGAGAAGCTTTCATCAAGATTTGTAGAGTCAAATTACTCAGAAGGAAGGTTTGAGATGATGCTTCAAATGGATGGTATTCTTTCCATTCATGCTTTAAACTCGCCATCTGGGTATGCCAATGAAAACTACTACGAAAGTAGGACTGAAGAGTCCAACACATCAAGTCCTGGAATTCGTTTGGTGTTTGAACCATCTGGGTATGTGTATGTTTTGAGGAAGAACAGTGAGAAATACAACTTGTCAACATGGAGTGGAGCCTCTACTACTGATGAATCTTACTTCAGAGCAACTCTTAATTTTGATGGGGTGTTTACACTCTATCAACATTCAAAGAGTTCGTTTGGGAGTGATGGTTGGAGTGCTGTTTGGTCTCAGCCAGATAACATCTGTCTCAGCAGGCTTGCCACTGAAGGTAGTGGTGTTTGCGGGTTCAATAGTGTGTGTACGTTGGGAAGTAATCAGAGGCCAAGTTGTCAATGCCCAAAATGGTACTCTTTGGTTGACCCTAATGACCCCTACGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAACTCATTGGAAAAGCAGATGCAGCTGGATATGATTTTGAGGTGTTGGTAAATACAGATTGGCCTCTTTCAGATTATGTGCTTCTTAAACCCTTTACTGAAGAACAATGTGAACAGTCATGTTTGGAAGATTGTATGTGTGCAGTTGCCATCTACAAATCAGGTAGTGATTGCTTCAAGAAGAAGTTGCCTCTTTCAAATGGTAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGATTGTTCCACAAGCCAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTCTGGTTGCTTGGGTACTTTTTGGAAGCTCTTCATTTCTCAATGTCATATTTGTTGGAGCCTTATGCGTGTGCTTTTTCTACATCTTTCAGTACAAGACGAAGCTTAGAGGAATTGGCAAAAGTGCTAATGCCCTTGAAACTAACTTGCGTTGCTTCTGTTATGAGGAGCTTGAAAGAGCTACAAATGGTTTCCAGAAAGAGTTAGGAAGAGGGTCTTTTGGTGTTGTCTATGAAGGAGTCATAAACATAGGCTCAGCAATTCCAATAGCAGTAAAAAAGCTGAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAACGAGTTACATGTCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCTGAAAAAGAAAGATTGTTGGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAGTGAGGTGAAACCTGAGTGGAAATTAAGGTTAGAGATTGCATCTGGGGTTGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACTCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCATTGATGAGTACTATAATGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCAGTAGAATGGTTTAAAAACATGCCTATCACAGCTAAAGTGGATGTCTATAGTTATGGTGTGTTGTTGCTTGAGATCATTTGTTGCAGAAGAAATGTAGAAATGGATCTAGAAGAGGAAGAGAAGGTTATACTAATTGATTGGGCTTGTGATTGCTATTCAAGAGGTACTTTTGATCCCTTGGTTAAAGATGACAAGGAGGCATTGGATGACAAAAAGAACATGATGAAGTTGGTGATGATTTCCATTTGGTGCATTCAAGAGGATCCAATTCTTAGACCAACCATGAGAAAAGTGACACAGATGCTTGAAGGTGTTGTAGAAGTCGAACCTCCACCATTCCCCTCACAATTTAGTACACATTCTCAAAATCCATGA 2499 0.4102 MVLLHIFAVAQTRSSKIIDQSLLKETIKASWVVSSSGEINQTTRNITVGDSLFAETTSSNSSTWVVSRLGHFAFGFLPLEDTDHFLLSIWYAKIPGKTVVWYANGDTPAPKGSKVELTGDDGLVLTAPNGDLLWKAKTLSGKVHHGFLKDNGNFVLVNENHQGVWETFKHPRDTLLPTQTLEKGEKLSSRFVESNYSEGRFEMMLQMDGILSIHALNSPSGYANENYYESRTEESNTSSPGIRLVFEPSGYVYVLRKNSEKYNLSTWSGASTTDESYFRATLNFDGVFTLYQHSKSSFGSDGWSAVWSQPDNICLSRLATEGSGVCGFNSVCTLGSNQRPSCQCPKWYSLVDPNDPYGSCKPDFIQGCAEDELIGKADAAGYDFEVLVNTDWPLSDYVLLKPFTEEQCEQSCLEDCMCAVAIYKSGSDCFKKKLPLSNGRVDVGLNGAKTFIKVRKDNSSLIVPQAKVNENSKSSLSLVAWVLFGSSSFLNVIFVGALCVCFFYIFQYKTKLRGIGKSANALETNLRCFCYEELERATNGFQKELGRGSFGVVYEGVINIGSAIPIAVKKLNTLLFQQVEMEFKNELHVIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFSEVKPEWKLRLEIASGVARGLAYLHEECITQIIHCDIKPQNILIDEYYNARISDFGLAKLLKMNQSRTNTAIRGTKGYVAVEWFKNMPITAKVDVYSYGVLLLEIICCRRNVEMDLEEEEKVILIDWACDCYSRGTFDPLVKDDKEALDDKKNMMKLVMISIWCIQEDPILRPTMRKVTQMLEGVVEVEPPPFPSQFSTHSQNP 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01485 832 ProSiteProfiles Bulb-type lectin domain profile. 49 169 IPR001480 -
Vimu9g01485 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 618 818 - -
Vimu9g01485 832 PIRSF SRK 24 832 IPR024171 GO:0004674
Vimu9g01485 832 SUPERFAMILY Protein kinase-like (PK-like) 526 825 IPR011009 -
Vimu9g01485 832 Pfam D-mannose binding lectin 98 183 IPR001480 -
Vimu9g01485 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 40 169 - -
Vimu9g01485 832 SMART blect_4 51 171 IPR001480 -
Vimu9g01485 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Vimu9g01485 832 Pfam Protein kinase domain 542 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01485 832 Gene3D Phosphorylase Kinase; domain 1 515 617 - -
Vimu9g01485 832 ProSiteProfiles Protein kinase domain profile. 539 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01485 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 57 821 - -
Vimu9g01485 832 SMART serkin_6 539 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01485 832 CDD B_lectin 57 171 IPR001480 -
Vimu9g01485 832 ProSitePatterns Protein kinases ATP-binding region signature. 545 570 IPR017441 GO:0005524
Vimu9g01485 832 Gene3D - 172 312 IPR036426 -
Vimu9g01485 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 223 IPR036426 -
Vimu9g01485 832 FunFam S-receptor-like serine/threonine-protein kinase 509 617 - -
Vimu9g01485 832 Gene3D - 45 170 IPR036426 -
Vimu9g01485 832 Gene3D Transferase(Phosphotransferase) domain 1 618 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01485 Vimu-Chr9 23991542 23994040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01485 525 822 Receptor kinase-like Gene Family AT1G60800 37.855 8.90e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu9g01485 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01485 - - vra:106773297 1646.33