Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01457 ATGTCAAAGGCGCTGATTGCGCAGAAGAGAACGAGAAAGAAGGACGAAGAGGAGTACGGGAGAGTGTCGTTTGAAGAAGAAGTGCTCCGTCGTTTCGATCATGCGCTCTTGCCGAGGCTGAGAGGCGTTCTGGAAACGGACAAAGTGATTGCGTTCGCCATCGATTACTGCCATGGTGGCACGCTTCACTCTCTCAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGACACCATCAGGTTTTACGCTGTAGAATTGGTGCTTGCATTGGAATATTTACACGAATTGGGAATAGTGTACAGAGATTTGAAGCCAGAAAATGTGATGATTCAAGAAAACGGCCACATAATGCTCGTCGATTTTGATCTCTCCAAAAAGCTAAACCCCAAATCCCCTCACTCACTGAGTCAAAACTCGACCCCGAGTCCTAACTCGGAGAAACGTTCAAGGAAACAACAACGATTAACTCGTATATACAGTTTTTGCAACTCCGGCATCTCGCCGTGGGACTCGGACTCGGAGCCCGCGCTAAGTACAGTCGACTCGGTGCGTCGCACCGAGTCCGACTCGGTTGAGAAATCAAACTCGTTCGTTGGAACAGAAGAATACGTGGCACCCGAAATCTTATCAGGGAAAGGTCATGGTTTTAGCGTCGATTGGTGGTCATACGGCATCTTGTTGTACGAGATGCTGTACGGAACGACGCCGTTTAAAGGCTTAAATAGGAAGGAAACGTTTTACCGGATCTTAACTAAAGAGCCAGAGTTAACGGGAGAGAAGACGGCGTTACGGGATTTAATTTCAAGATTGTTGGAAAAAGATCCTGACCGTCGGATCTCATTGGAGGAGATCAAAGGCCACGATTTCTTCAAAGGGGTCAAGTGGGACAAAGTGTTGCAGATTGCAAGACCACCTTATATTCCCACAAATGAGGTTGAGAACAAAGTGGGGTTTAGCAAAAACGACGTGGAAGTGTTTGTGAACGAAGTGTTTTTTCCAACGAATGATGATGATGGCGTAGAGAATCGTGAGCATAACAAGAAGAATGACGATTTTTTAATTTTTTGA 1068 0.4597 MSKALIAQKRTRKKDEEEYGRVSFEEEVLRRFDHALLPRLRGVLETDKVIAFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHELGIVYRDLKPENVMIQENGHIMLVDFDLSKKLNPKSPHSLSQNSTPSPNSEKRSRKQQRLTRIYSFCNSGISPWDSDSEPALSTVDSVRRTESDSVEKSNSFVGTEEYVAPEILSGKGHGFSVDWWSYGILLYEMLYGTTPFKGLNRKETFYRILTKEPELTGEKTALRDLISRLLEKDPDRRISLEEIKGHDFFKGVKWDKVLQIARPPYIPTNEVENKVGFSKNDVEVFVNEVFFPTNDDDGVENREHNKKNDDFLIF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01457 355 Pfam Protein kinase domain 6 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01457 355 Pfam Protein kinase domain 192 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01457 355 MobiDBLite consensus disorder prediction 129 146 - -
Vimu9g01457 355 FunFam Serine/threonine-protein kinase OXI1 61 129 - -
Vimu9g01457 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Vimu9g01457 355 ProSiteProfiles AGC-kinase C-terminal domain profile. 291 355 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu9g01457 355 SUPERFAMILY Protein kinase-like (PK-like) 4 313 IPR011009 -
Vimu9g01457 355 SMART serkin_6 2 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01457 355 PANTHER FLIPPASE KINASE 1-RELATED 15 315 - -
Vimu9g01457 355 MobiDBLite consensus disorder prediction 129 152 - -
Vimu9g01457 355 Gene3D Transferase(Phosphotransferase) domain 1 61 131 - -
Vimu9g01457 355 FunFam Serine/threonine-protein kinase OXI1 192 309 - -
Vimu9g01457 355 ProSiteProfiles Protein kinase domain profile. 1 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01457 355 Gene3D Transferase(Phosphotransferase) domain 1 190 309 - -
Vimu9g01457 355 Gene3D Phosphorylase Kinase; domain 1 5 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01457 Vimu-Chr9 23435142 23437518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01457 1 331 AGC Kinase Gene Family AT3G25250 60.479 4.22e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu9g01457 Pkinase 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01457 K20714 - gmx:100785773 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03961 6 39221828 39224828 Vimu9g01457 9 23435142 23437518 PCT