Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01456 ATGGGACCAAACGCTGCGGCGGCCAAACAAGCTGAGCAACTCCGAATTAACGGCAACACTTACTTCAAGAAAGACCGTTTTGGGGCTGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGCTGGACAGCAATTCAGTCAAGGCCCACTATATGTTGGGGCTAGCATTACTACGGAGACAAGAATCTGCCAAGGGAATTAAAGAATTGGAGAAGCAAAAGCAGAGGAACCAAACAGAGTCAGAGAACTGCAAGCCTGGTGGAGAAGACCTCTGGTTCAGTGGTTCATGCAACTCTTTTGAGGCTCAGTCATTTTACCCGTTTTGTTTTCATTTCAAATGCCTGATGATTCTGCTTTTGTTTGTGATCATAATTAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCTAAATACCATGAGTGGGAGCGATCATCTTCGAAACGAGCATGGAAGTTGCAGAGCCTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTGGAATTCTCCGAAGCAGAAGGATTTGTAGATGATCCTACTACTTCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTACTTATGTTGCAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGAACACCTGCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAGCATGGTTGGGCTTACAAGGTAGACTAA 999 0.4615 MGPNAAAAKQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLRRQESAKGIKELEKQKQRNQTESENCKPGGEDLWFSGSCNSFEAQSFYPFCFHFKCLMILLLFVIIIKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSKRAWKLQSLKEACESALKEKHFLEFSEAEGFVDDPTTSHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01456 332 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vimu9g01456 332 CDD RING-Ubox_CHIP 255 325 IPR045202 -
Vimu9g01456 332 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vimu9g01456 332 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vimu9g01456 332 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Vimu9g01456 332 Gene3D Tetratricopeptide repeat domain 3 118 IPR011990 GO:0005515
Vimu9g01456 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 331 IPR013083 -
Vimu9g01456 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 158 330 IPR045200 GO:0000209|GO:0061630
Vimu9g01456 332 SUPERFAMILY RING/U-box 249 329 - -
Vimu9g01456 332 SUPERFAMILY TPR-like 10 113 IPR011990 GO:0005515
Vimu9g01456 332 SMART tpr_5 11 44 IPR019734 GO:0005515
Vimu9g01456 332 SMART tpr_5 79 112 IPR019734 GO:0005515
Vimu9g01456 332 SMART tpr_5 45 78 IPR019734 GO:0005515
Vimu9g01456 332 Pfam U-box domain 255 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01456 Vimu-Chr9 23416431 23422658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01456 4 331 U-box Gene Family AT3G07370 56.707 1.02e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01456 K09561 - gmx:100796519 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03969 6 39317232 39319950 Vimu9g01456 9 23416431 23422658 PCT