Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01455 ATGGACCAAATGGATGACGAGTCATGGAAAAAATGGGTTTCAATTTTGGAGGAAAATGATTGCCATACTTTAACTGATTTTGACTTGAACTCCGTTGGAGAAGAATTTAAGGAGGACAGTTCTGTGGTGCCTGCAGAAGACTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTTCATCTTTGGAAAAGAACACTGGCTTTGACATGACAAGTCTCACACAACAACATGCTTCTTCACAAAAACCAAAGTCTTGTCTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGGTAAGAAAACATGCCAACATCTTGGTGAACACTCAAATCAGACTCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAAGTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGACTTGGAAAAGATGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGGTTCTTGAGCAGCGTGTGAAAGATTTGGAAAAAGAGAATAAGAAGAGGAAGATAGAATCAGAAGAAGGATGGTTGAAAGTGAGAAAAAGCAACATGGTTGGTTATGAGTTTTCATGGAGCTCTGATGCTTGTTATGATGATGAGAAAGCTAGCAATAAATGTTGGAAGGTTCAAACAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACCTGTGAGATGCAAAGAAACGTTGTGCAGACTGTAATGGCCACGCTTGAAGCTCATAATCTCTCTGTTGTTTCCAGCAATGTTTTGCCTTTTGGGAATTCCGCTCTCACCATTACCAGCATTGCTCAGATGAACCCTAAATTCACCACCACAGTTGACAACTTTGTGAAAATGTTGACTGAGGATTTGTCCAAGTGCTGTAATCTGCATTATTAA 957 0.396 MDQMDDESWKKWVSILEENDCHTLTDFDLNSVGEEFKEDSSVVPAEDSLKESSTTLLSNFSSLEKNTGFDMTSLTQQHASSQKPKSCLLSFENFTSVPIFGKKTCQHLGEHSNQTQEKTRKPLKRERKSSQTLDHIMAERKRRENLTKMFIALSALIPDLEKMDKVSVLNKAIEYVKVLEQRVKDLEKENKKRKIESEEGWLKVRKSNMVGYEFSWSSDACYDDEKASNKCWKVQTRVAGKDVLIRVTCEMQRNVVQTVMATLEAHNLSVVSSNVLPFGNSALTITSIAQMNPKFTTTVDNFVKMLTEDLSKCCNLHY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01455 318 Coils Coil 169 196 - -
Vimu9g01455 318 SMART finulus 136 185 IPR011598 GO:0046983
Vimu9g01455 318 MobiDBLite consensus disorder prediction 113 131 - -
Vimu9g01455 318 Pfam Helix-loop-helix DNA-binding domain 135 179 IPR011598 GO:0046983
Vimu9g01455 318 PANTHER BHLH TRANSCRIPTION FACTOR 8 310 - -
Vimu9g01455 318 Gene3D - 124 200 IPR036638 GO:0046983
Vimu9g01455 318 MobiDBLite consensus disorder prediction 107 131 - -
Vimu9g01455 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 198 IPR036638 GO:0046983
Vimu9g01455 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01455 Vimu-Chr9 23319435 23321146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01455 11 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.831 3.57e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01455 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01455 - - vun:114166535 437.958