Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01440 ATGTCTTACACTTCATCATCCTCAAAATCTAAGCTCCGATGGATATACGATGCGTTCATCAGTTTCCGCGGGGAAGACACTCGTAAGAATTTCGTTTCTCATCTCTATTCAGCTCTTGCAAATGCCGGGGTCAACACTTTTCTGGACGATGAGAAGCTTGCCAAGGGACAACAGCTGAAAACAGAACTGTTTCATGCAATAGAAGGCTCTCAAATTTCCATTGTTGTTTTTTCCGAAAACTACATTTCCTCTAGATGGTGTCTCGACGAACTAGTCAAAATCATGGAATGCCATGCTTCTAGAGGTCAAGTGGTTCTGCCCGTGTTTTACGGCCTTTTCCCTTCGTTTCTTCGTCGCCTCCACGATGTTAATTTCGAAGTCATTCTGGAAAAAAATAGTGATCTCCACCGGGTGAAACAATGGAAGAAAGCACTGGGAGACGCAGCAGATTTTGCAGGTTGGGAAGTTTCGAAGTACAGAAGTGACGACTTTGTTGTGAAGGAAATTGTTAGTGAAGTTTTGGAAAGACTAGATAGAACATACATGTCTATTACAGACTTTCCAGTTGGATTGGAATGTCGTGTGGAACATTGTATTGGCCTTCTAAGAAAGGAAACAAGAGGAGCTTATATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCCAAAGCCATCTACAATGAAATTCGATATGAATTTAAACATAAAAGTTTCCTAGCAAATATAAGAGAAGTTTGGCAAAGAGACCAAGGGCAGATTGATTTACAAGAACGACTTCTTTCAGATATCCTGAAAACAGAAAAGGTGAAGGTTTATAGCAGTGATTGGGGAAAAGCTATGATCAAGGAAACGCTTTGCACCAAAAGAGTACTTGTTGTACTCGATGATGTTAATACATTAGAACAATTAAGTGCACTATGTGGAAATGGTAATGGAATTGTTCAAGGAAGTGTAATAATCATTACAACAAGAGATGTACGTCTACTCAATGTTCTTGAAGTTGACCATGTATATGAAGTGGAGGAAATGAATGAGATTGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAAGGAAGCAAATCCATCAAAAGCTTTCCTTGAACTGTCAAAACAAGTAGTCACTTACTGTGGAGCACTACCTCTAGCTCTCGAAGTTCTTGGATCTTATCTATACAAGAGAAGAGAAAAAGAGTGGCAAAGTGTATTATCAAAACTGAAAGAAATACCAAATGATAAAATACAAGAGAAATTGAAAATAAGCTATGATGGTTTAACCGATGATACGGAGAAGGACATATTCCTTGACATATGTTGCTTCTTTATCGGTAAGGACAGAGGCTATGTCACAGAGATACTAAATGGCTGTGGACTTCATGCTGAAATCGGAATAACAGTCCTGATAGAAAGGAGCCTCATAAAAGTTGAAAAGAATAACAAACTTGGAATTCATGATTTGCTACGAGACATGGGCAGAGAAATTGTTCGTCGTAGTTCACCGCTAGAACCACAGAAGCGCAGTCGGTTGTGGGTTCATGATGATGTACTTGATATATTGACAGAACATACTGGAACAGGAGTCATTGAAGGATTGGCTTTGAAGATGCAAAGAACCAGTGGAGTTTGTTTCGGTACTGAAACATTTGGGAAAATGAAGAGACTGAGACTTTTGAAACTTGATAATGTACAAGTAGCTGGAGATTATGGGCATCTTCCCAAACAACTGAGATGGGTTGATTGGAAAGCATTTTCATTAACCCACATACCTGAAAACTTCTATCAGGAAAACATAGTTGCTATTGACTTAAAATACAGTTATCTTAAACTAGTATGGAAGGTGCCTCAGTTTCTGGAGAGGCTAAAATTTCTCAATCTTAGTCATTCCAAGTACTTATCAAAGACCCCAGATTTTTCAAAACTACCAAATCTTGAGAAGCTCATTCTCAAAGGTTGTCCAAGTTTGAATGAAGTACACCATTCAATTGGAGATCTAAGTAACCTCCTTCTTCTAAACTTGAAGGATTGTACATGCCTAGGCAATCTTCCTATGGTAATCTATAAGTTAAAGTCATTACAAACCCTCATCCTTTCTGGTTGTTCAAATATTGACAAGTTAGAAGAAGACATAGGGCAGATGGAATCCTTAACAACTCTAATTGCAGACAATACTAGTCTAAAACAAGTGCCTTTTGCCATAGTAAGATCCAAACAGATTGGATATATATCCCTTTGTGGATATGAAGGATTGGCACGAGATGTATTTCCTTCTCTCATATGGACTTTGATGTCACATACAAGAGGAACTTTATCCTGTTTTCAACCATTTGGGATCATGCCAACATCTATAGTCTCCATGAATATACAGGATAATAATTTGGTTAACCTATTATCAAAAGTAGGTGAATTTTCAAAACTTCGAAGTATTTCTGTACAATGCGACTCGGATTTTCAACTAACTCAAGAATTAAGATCAATTCTGCATAAGTTATGCAATGTAAACTCGTCTGAACCGGAAAGTGCACATCAATCACAAATTCCAGATAATTCTATGGCATCGTATTTGATTGGAATGGGAAGCTACCAGCAAGTTTTCGATATGCTTAGCAATAGCATATCAAAGGTATTGAGAACCAATAGTTGTACTGATTTTGTGCTTCCAGGGGACAATTATCCTTATTGGTTAGCCTATACAGGGGAAGGTTATTCAGTACCTTTTCAAGTTCCTGAAGATAGTGATTGTCGCATGAAGGGAATGCTGTTGTGTGTTGTTTATTCATCAACCCCTGGAAACATGGCAACTCAAAATCTTACTAATATCTTCATCTTTAATTACACAAAGTGCACCTTTCAGATATATAAGCAAGCAACAACAATGTTCTTTAGCGATGAAGATTGGCAGGGTGTAATATCAAATCTAGGACCCGGAGACAACGTGGAGATTTTTGTAGGTGTTGGTGATGGAATCACTGCTAAGAAAACAGCAGTGTATCTGATATATGGTCAGTCAATTACAATGAGATTGGAGTCACTTGGACTGAGTGCACAAGAATCACCTGAGTTGAGTGTGATTCTGTTACCTAAAATGAGTGCACGACCAACCAATGATGTGGAAATGAAGGCGAAGAAACCGAAGAAAAATATAATTTCAAAAATTAGAAGCATTGTTAGAGCACTTAAATGTTTTGTTTCTATTATTATTATTATAATCACCAGCGTTCAACCGACACAGATACACACGATTCCACCATACTTTCCTGTCATTTTAAAACCGTTCAACATCTATAAAACCCCTTCCCAACTGTGCTCAGTTGCTTGGGGGCTTATGGTCGACCCATGA 3348 0.382 MSYTSSSSKSKLRWIYDAFISFRGEDTRKNFVSHLYSALANAGVNTFLDDEKLAKGQQLKTELFHAIEGSQISIVVFSENYISSRWCLDELVKIMECHASRGQVVLPVFYGLFPSFLRRLHDVNFEVILEKNSDLHRVKQWKKALGDAADFAGWEVSKYRSDDFVVKEIVSEVLERLDRTYMSITDFPVGLECRVEHCIGLLRKETRGAYILGIWGMGGIGKTTIAKAIYNEIRYEFKHKSFLANIREVWQRDQGQIDLQERLLSDILKTEKVKVYSSDWGKAMIKETLCTKRVLVVLDDVNTLEQLSALCGNGNGIVQGSVIIITTRDVRLLNVLEVDHVYEVEEMNEIESLELFSWHAFKEANPSKAFLELSKQVVTYCGALPLALEVLGSYLYKRREKEWQSVLSKLKEIPNDKIQEKLKISYDGLTDDTEKDIFLDICCFFIGKDRGYVTEILNGCGLHAEIGITVLIERSLIKVEKNNKLGIHDLLRDMGREIVRRSSPLEPQKRSRLWVHDDVLDILTEHTGTGVIEGLALKMQRTSGVCFGTETFGKMKRLRLLKLDNVQVAGDYGHLPKQLRWVDWKAFSLTHIPENFYQENIVAIDLKYSYLKLVWKVPQFLERLKFLNLSHSKYLSKTPDFSKLPNLEKLILKGCPSLNEVHHSIGDLSNLLLLNLKDCTCLGNLPMVIYKLKSLQTLILSGCSNIDKLEEDIGQMESLTTLIADNTSLKQVPFAIVRSKQIGYISLCGYEGLARDVFPSLIWTLMSHTRGTLSCFQPFGIMPTSIVSMNIQDNNLVNLLSKVGEFSKLRSISVQCDSDFQLTQELRSILHKLCNVNSSEPESAHQSQIPDNSMASYLIGMGSYQQVFDMLSNSISKVLRTNSCTDFVLPGDNYPYWLAYTGEGYSVPFQVPEDSDCRMKGMLLCVVYSSTPGNMATQNLTNIFIFNYTKCTFQIYKQATTMFFSDEDWQGVISNLGPGDNVEIFVGVGDGITAKKTAVYLIYGQSITMRLESLGLSAQESPELSVILLPKMSARPTNDVEMKAKKPKKNIISKIRSIVRALKCFVSIIIIIITSVQPTQIHTIPPYFPVILKPFNIYKTPSQLCSVAWGLMVDP 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01440 1115 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 179 - -
Vimu9g01440 1115 Pfam NB-ARC domain 195 418 IPR002182 GO:0043531
Vimu9g01440 1115 PRINTS Disease resistance protein signature 381 395 - -
Vimu9g01440 1115 PRINTS Disease resistance protein signature 288 302 - -
Vimu9g01440 1115 PRINTS Disease resistance protein signature 211 226 - -
Vimu9g01440 1115 PRINTS Disease resistance protein signature 690 706 - -
Vimu9g01440 1115 Gene3D - 8 175 IPR035897 -
Vimu9g01440 1115 ProSiteProfiles TIR domain profile. 14 177 IPR000157 GO:0007165
Vimu9g01440 1115 SMART till_3 15 151 IPR000157 GO:0007165
Vimu9g01440 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Vimu9g01440 1115 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Vimu9g01440 1115 Gene3D - 346 430 IPR042197 -
Vimu9g01440 1115 Gene3D Ribonuclease Inhibitor 547 708 IPR032675 -
Vimu9g01440 1115 Gene3D Ribonuclease Inhibitor 709 847 IPR032675 -
Vimu9g01440 1115 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 759 IPR044974 GO:0006952
Vimu9g01440 1115 Gene3D - 176 341 IPR027417 -
Vimu9g01440 1115 SUPERFAMILY L domain-like 504 823 - -
Vimu9g01440 1115 Pfam TIR domain 16 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01440 Vimu-Chr9 23049264 23054379 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01440 16 759 WRKY Transcription Factor Family AT4G12020 30.534 1.59e-85 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01440 - - vra:106773318 2000.33