Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01432 ATGGAATTTGCGTCTTCATCATCCAAACTCCCACGGTATTACGACGTGCTCATCAACTTCAATGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTCTGTCCTCTCGTCCGTTGGACTCACCACTTTCCTCCATCATCAGAATGCAGTGGAGTCAACGCACCTCCAACAACCTATTCTCGATCTCTGTCGGGTAGTAATAGTTGTTTTCACCAAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACCAAACTTATTGTCGACATGTTCTGCCTGTATATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAGGCCTTCAAAGCAACTGCACATCAAACATTTTCAGCAAAACAACTTCAGCATGGCATGTCCAGATGGAGTCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGAATGGGAGTAATTCCAGGAGTGATGCTGAACTAGTGGACCAAATTGTTAAGAGCGTTCTTAATTCATCAGTTTTGTCTGCTACTAAATTCCCAGTTGGATTACAATACAAAGTGGAAAAACTAATTCAAACTATAAAAGATAAATCCATGGATGTTTGTATAATAGGAATATGTGGAATGGAAGGATCAGGTAAAACCACCCTTGCCAAAGTCATCTACCATCAAATCCATGGTACATTCTTGCATAAAAGTTTCATTGAAGATATTGCACAAGTTAGTGAATCAAGAGGGCGTGTTCATTTACAGGAACAACTTCTTTCAGATGTCCTAAACACAAAGGTGAAGATAGATTCCCTTGAGATGGGAAGAAATATGATTCGGGACAGACTTTTTGGGAAAAGGGTCCTCATTGTACTTGACGATATGGATAACTATATTCCGTTATTAGATCTAAGCAAAATTCGTTCATGGTTAAGTGAAGGAACTGTAATAATCATGACAACATCATACAAAGAACTATTAAACAAATATCAAATTCATCCTTATTTTGTGGTAAATCCAATGAAGGAAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAGCCAAACGAAGAATACGATTACCTTGCACGAAGAGTAATTTCTTATTGTGGGGGACTACCTCTAGTTCTTGAAGTCATTGGAAGTACCTTATTTGAAAGGACGGAAGAGGAATGGCATAATGTATTGTTTGAATTAGAGAAAATTCCCATCATCGATGTTCTACCGAAATTGCAAATAAGCTTGAACCGTTTAAGAAATCAGATGGAAATGGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGGACAGAGTCTATGCTACGAAAATCCTAAATGGCTCTAGAGTGGAAGCTGATAGTGACACAAGTGTTCTACATGGCTTTAGAGTAGACGCTGAAAATGGAATAAGAGTTCTCATGGATCGTAATCTCATTAAAGTCAAAAGTAATAACAAATTTGGAATCCATCCTGTACTACAAGAAATTGGACTAGCAATTTTTCGGAAAATTTCAAGAAAGAAAGGTTGGAAGAACGGTCAACTGTTGTTTGATGTGGATACAGAATACGCATTGGAAGTGAATGATGAGAGCAAAGACTATGAGGTATTGCCTGTGTTGCTTTCAACTAGAAGAGAACCATCAAGACTGCCGAAAGACGCTGTAAATTCTGAGAACCTTCCTCTGAAATTGAGATGGATTAGTTTCCATGGGTTTTCTATACAAGACCTACCCAATGTCTTTAATGCGCATGATGCAATAGCGATTGAACTAAAACACAGTCTTCTTCAATTCTTTTGGGAAGAACCCCAGGTTTTGAAATCGCTAAAAGTCCTTAACCTTAGTCACTCCTTGTACTTGACACGAACACCTGACTTTTCGAGACTACCAAATCTTGAAGAACTCATTCTAAAAGATTGTCCGAGATTGCGGGAAGTACACCAATCTATTGGACATCTCAGTTATCTTATACTGCTCAATTTGAAGGACTGTAAATGTCTAAGCAATCTCCCCCAAGAGGTATATAATTTGAACTCTTTAAGAACTCTTATCCTCTCTGGGTGTTCGAAGATTGACCCAATGGAGAAAGATATACTGCGAATGAAATCCTTGATAACTCTAATTGCTGAAAATACATCTGCAAAACAAGTACCTTTTTCAATTGTAAGTTCAAAAGCCATTGGATATATATCCTTACGAGGATTTGAGAGATTGTCATGTAATCCTTTTCCTTCAATCATTATTCGGTCTTGGATGTCGCCAACAATGAATCCCATATCTTATATTAATTCGTTGTGCATGGATATCGATAACAGTTGGGAAAATATTGGACCATTGCTTAGCACCCTGAAATATCTTAGAAGTGTTTTGGTGCAATGTGACACCGAGTTTGAACTATATAAGCAAGTAAAGAATATTCTGGTAGACTATTATTCAAATATTACCGAATCAGAAATTTCAAAGCAGCACTTGAGGTCTTCTTTGATTGGTGTTGGAGCATACCATGAATTCTTCCATGCTGTCAGCGATAACATTTCTGAGGTATTGGCAAGTAGCGTGTCTTCTGATATCTCTCTTCCCGGTGACAACCAACCTTATTGGTTGGGCTATATGGGTGAGGGAGATTCTGTTTCTTTCATTGTGCCTCCAGATAATGACATTAAGGGAATGGTTTTGTGTGTTGTTTATGTACCAACCCCTGAAATTGTGGCAACTGAATGTCCTAGAAGTGTTTTAATTGTTAATTACACAAAGTGCACATTGCATATACACATGCATGGCGAAATAATTTCCTTTAATGATATAGATTGGCAGACTATAAGATCAAATTTAGAATCAGGAGACAAGGTGGAGATTTTTGTAACTTTTTCTCAAGGATTGGTGGTCAAGAATACATATGTCTATCTTATATGTGGTGAATCACATTACTTGGAAAAACCATCGTCGCTGTCGCAGAACGAAACGCACCTCCACCAAACCCTTAGGTCAACGTATGGGGTAGGACAACTTGCCTCCAATTACAGTGCTGGAAGAGGAGGGATATTGAAACATCAACCATCTACATCTAGCACATTTGACCAGAGCAATGTTGTTAGTAAAAAGGCTTATGATGCAAATCTATCCAGATTTGACAATCTTCAAAATCTGGTTAAGACATTGCTACCTCAACAAGGACAGTCCCCCATCATCATCCCACCTTCCCACACCACATTTGTTCAAGAAGAAGATCATGATGATGATTCTGATGATTACAATGATTATTAG 3291 0.3832 MEFASSSSKLPRYYDVLINFNGEDIRRKFVSHLDSVLSSVGLTTFLHHQNAVESTHLQQPILDLCRVVIVVFTKTYSESAWCLHQLQQIIQWHQTYCRHVLPVYYEIQPSDVRLQKGDFGKAFKATAHQTFSAKQLQHGMSRWSHALTKAANFFGWNGSNSRSDAELVDQIVKSVLNSSVLSATKFPVGLQYKVEKLIQTIKDKSMDVCIIGICGMEGSGKTTLAKVIYHQIHGTFLHKSFIEDIAQVSESRGRVHLQEQLLSDVLNTKVKIDSLEMGRNMIRDRLFGKRVLIVLDDMDNYIPLLDLSKIRSWLSEGTVIIMTTSYKELLNKYQIHPYFVVNPMKENESLELLSWHAFREAKPNEEYDYLARRVISYCGGLPLVLEVIGSTLFERTEEEWHNVLFELEKIPIIDVLPKLQISLNRLRNQMEMDLFLDVCCFFVGKDRVYATKILNGSRVEADSDTSVLHGFRVDAENGIRVLMDRNLIKVKSNNKFGIHPVLQEIGLAIFRKISRKKGWKNGQLLFDVDTEYALEVNDESKDYEVLPVLLSTRREPSRLPKDAVNSENLPLKLRWISFHGFSIQDLPNVFNAHDAIAIELKHSLLQFFWEEPQVLKSLKVLNLSHSLYLTRTPDFSRLPNLEELILKDCPRLREVHQSIGHLSYLILLNLKDCKCLSNLPQEVYNLNSLRTLILSGCSKIDPMEKDILRMKSLITLIAENTSAKQVPFSIVSSKAIGYISLRGFERLSCNPFPSIIIRSWMSPTMNPISYINSLCMDIDNSWENIGPLLSTLKYLRSVLVQCDTEFELYKQVKNILVDYYSNITESEISKQHLRSSLIGVGAYHEFFHAVSDNISEVLASSVSSDISLPGDNQPYWLGYMGEGDSVSFIVPPDNDIKGMVLCVVYVPTPEIVATECPRSVLIVNYTKCTLHIHMHGEIISFNDIDWQTIRSNLESGDKVEIFVTFSQGLVVKNTYVYLICGESHYLEKPSSLSQNETHLHQTLRSTYGVGQLASNYSAGRGGILKHQPSTSSTFDQSNVVSKKAYDANLSRFDNLQNLVKTLLPQQGQSPIIIPPSHTTFVQEEDHDDDSDDYNDY 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01432 1096 Pfam TIR domain 14 179 IPR000157 GO:0007165
Vimu9g01432 1096 Gene3D - 344 427 IPR042197 -
Vimu9g01432 1096 SUPERFAMILY L domain-like 569 818 - -
Vimu9g01432 1096 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Vimu9g01432 1096 Gene3D Ribonuclease Inhibitor 550 707 IPR032675 -
Vimu9g01432 1096 Pfam NB-ARC domain 191 413 IPR002182 GO:0043531
Vimu9g01432 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 429 IPR027417 -
Vimu9g01432 1096 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vimu9g01432 1096 SMART till_3 13 153 IPR000157 GO:0007165
Vimu9g01432 1096 Gene3D - 175 339 IPR027417 -
Vimu9g01432 1096 Gene3D - 7 174 IPR035897 -
Vimu9g01432 1096 PRINTS Disease resistance protein signature 210 225 - -
Vimu9g01432 1096 PRINTS Disease resistance protein signature 285 299 - -
Vimu9g01432 1096 PRINTS Disease resistance protein signature 684 700 - -
Vimu9g01432 1096 PRINTS Disease resistance protein signature 378 392 - -
Vimu9g01432 1096 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 718 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01432 Vimu-Chr9 22942770 22948369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01432 11 700 WRKY Transcription Factor Family AT4G12020 26.813 1.53e-54 206