Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01423 ATGGAAAATCAGTTCTTTATCAATTCTGGGGTGTCACAAACACAGCATCCCCTTCACTTTGAACCTTCACCACCACCACCACCTTCTTCTTCTTCAGTTCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACACTTCTCAATTGTGCCTCTGAGCAGACCCAGGATTGCTTTTACAACCCCAATTGGGAAAAATCAACAGATCATGCACTTCACTTTGATTCCTCAGCACTCAGTTCAATGGTCTCGTCTCCTGCAGCATCATCCAACCCCAGCAGCAACATGTCCAATGACAATTTCATCATCAGGGAATTGGTCGGGAGATTGGGAGCTATTGGGAGTTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCCTCTTCTTACATGAATAATGGCAGTGGCAGCCCCAATACTTCTTGTTACACCACCCCTTTGAGTTCCCCTCCAAAGGTAAAGACTGTGCAGAGCTTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATGACTTTGAATTCCAGTGTGGCCGAATTCTCTGCTGACCCTGGTTTCGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGTAGCAGGAGTTTCAATGGTAGGAACGTCCAATTGGGGGTGAACAATGGTGAATTGGCTCAAAGATCTGCGTCAGTGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCAAGTAGTCCTCTGCTCAAGACACTCGGATCTCAAATGGGTACCCCAGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAGTTGAGGTTGCCAATTCTCAAGAGGAATCTACCATATCTGAGCAAACACCAAATGGAGAAATTGGGATGAAAAATTGCCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAGAGAAACTTTTAACTCCATCAAGGGTGTTGAAGTCAGTGAGGATTCAAATTCAAAGCGAACCAAGCCAAACGAGGGTGAGGGAAACGAAAATGGACCGGTGAAGGTTGAGGAAGATTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGTCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGACAGCCTTGTTTCAAAAGATGTATTTCAATCTAATAATTCTTTGGCAACACACCCAAATCCAACATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCATCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCAATGCAATTACCCCCCCTAAATGGGTTTAATGAAGTTGCCTCTCAGTTTCCATTAACATTCTGTGAGGAGGATCTGCACACCATTGTGCAGATGGGGTTTGGGCAAACTGCAAACTGGAAAACACCAATTCAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1746 0.4427 MENQFFINSGVSQTQHPLHFEPSPPPPPSSSSVPSWQSLSPTMGIQPTLLNCASEQTQDCFYNPNWEKSTDHALHFDSSALSSMVSSPAASSNPSSNMSNDNFIIRELVGRLGAIGSSDEIPQHSPHPLVVASSYMNNGSGSPNTSCYTTPLSSPPKVKTVQSLVNERLANLGGKSMTLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSASVVENGGKLSRISSSPLLKTLGSQMGTPENKNSAIQDQEKVEVANSQEESTISEQTPNGEIGMKNCQDMTNSRKRKASSKGKTRETFNSIKGVEVSEDSNSKRTKPNEGEGNENGPVKVEEDSKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIDSLVSKDVFQSNNSLATHPNPTFPLDSSAQAFYGHQHQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEVASQFPLTFCEEDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVPQMKVEL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01423 581 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 262 490 IPR024097 GO:0006355
Vimu9g01423 581 MobiDBLite consensus disorder prediction 247 370 - -
Vimu9g01423 581 Gene3D - 376 451 IPR036638 GO:0046983
Vimu9g01423 581 MobiDBLite consensus disorder prediction 247 294 - -
Vimu9g01423 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 377 448 IPR036638 GO:0046983
Vimu9g01423 581 Pfam Helix-loop-helix DNA-binding domain 383 430 IPR011598 GO:0046983
Vimu9g01423 581 Coils Coil 426 446 - -
Vimu9g01423 581 MobiDBLite consensus disorder prediction 13 38 - -
Vimu9g01423 581 FunFam Basic helix-loop-helix transcription factor 376 448 - -
Vimu9g01423 581 CDD bHLH_AtBPE_like 369 454 - -
Vimu9g01423 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 429 IPR011598 GO:0046983
Vimu9g01423 581 SMART finulus 385 435 IPR011598 GO:0046983
Vimu9g01423 581 MobiDBLite consensus disorder prediction 322 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01423 Vimu-Chr9 22801450 22804269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01423 1 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.569 6.01e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01423 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01423 - - gmx:100801233 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03982 6 39516186 39518554 Vimu9g01423 9 22801450 22804269 PCT