Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01416 ATGGATAACGCCTCCTCATCGTACAAACTCCAACGGAGATACGATGTGCTCATCAACTTCACTGGAGAAGACATCCCGAAAAAAATTGTTTCTCATCTCAATTCTGCCCTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCCCAATGCAGTGAAGTCAACTCACATCCAAGAACCTATTCTCAGCCGCTGTCGGGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATAAAATGGCAAGAAACTTATTGCCGACATGTTCTTCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGATGGGTGACTTTGGAAAAGCCTTGAAGGCAACTGCACGACAAACATTTTCAGGACAAGAACTGGAGCATGGAATGTCCAGGTGGAGGCATGCACTCACCAAAGCTACAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAATTAGTGGACAAAATTGTTAAGAGCGTTGTTAATTTACCAATCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCGCGTGGAAGATCTGATTCGAACAATAAAAAAAAAATCCAATGAAGTTTATATGATAGGGATAGTTGGACAGAGAGGTTCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGATATTCAACAAGAAAAGTTTCATTGAAAATATTTCACAAGTTATAGAAATTAGCGGGCAGCTTCGTTTACAAGAACAACTTCTTCTAGATATCCTAAACCAAAAGGTGGAGATTCCTAGCATTGATGTGGGAAGAAGTATCATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGATGACTTGCCTGGCAATGATGAACTTTGGAATTGTAGTCATAATTGGTTCAGTGAAGGAACTGTAATAATCATTACAGCACTTCCTGGCGTAATGTGTAATTATCCAGTTGATTCTGTATTTAGCATAAAGCTAATGAACAAAGAGGAGTCTCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACGAAGACCTTGCAAGAAGAGTAGTTAGTTGTTGTGAAGGACTACCACTGGCTCTTGAAGTCGTTGGAAGTTGTTTATTTGAAAAGACCAAAGAAGAATGGAACAGTTTATTGTTTAAATCTCCGATCGCGGTGGTTGACATTTATACTGGTGACATTTATACTGGTGAAGAGATAATAAAAGTAATCATAGAAGGTTCACTGAATGAAATGGAAAAAGATATATTCTTTGATATATGTTGTTTCTTTGTTGGTAAGAGCAAAGCCTGTGTCACGAAGATCCTAAATAGCTGTGGAGTAGACGCTGATATTGGGATAAGAGTTCTCATCGAGCGTAACCTTATCAAAATTAACAAGAACAACAAATTTGGGATGCATCCTTGGCTACAAGAAATCGGAATAAATATTATTTATCTAAAATTAACTTTGAATTTAGAGAAGAACGGGCTACCGTCAAAATATGGGACAGAAGCCATGCCGTGGTTGCCTGTGAAACTTCTGACTTCCATCGAAAGTGTACGCCCGACTGAAATTTCTGGGTACCTTCTTAATAAAATAAGATGGCTCAGTTCGCATGGGCTTTCTTCAGAATGTCTGCCTAACAACTTTTATGAGGATAAGGCAACAGCGATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTTTGAGATCCCTAAAAGTCCTTAACCTCGGTCACTCCAACCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACAGCTCGTTTTGAAATATTGTTCAAGATTGAGCAAAGTACACCGATCTATTGGATCACTCAACAGTCTTACACTGCTAAATTCGAAATACTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGACTTGAAATCTTTAAGAACTTTCATCCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCAGAAAATACAGCAGTGAAACGTGTGCCTTTTTCAATTGTAAGCTCAAAAGGTATTGGATATATGTCCCTACGAGGATTTGAGGGATTATCTCATAATTTTTTTCCTTCTATCATTCGTTCTTGGATGTCCTCAACAATGAATCCCATTTCTTATATTCATTCGTTTTGCATGGATATGGAGGATAATACGATTGATATTGCACCGTTGCTTAGCACCCTTGCGAATATTCGAAATGTTTTGGTAGCATGTGACACCGAATTTCAGTTATCTAAGCAAGTGAAAAATATTTTGGTTGAATATTTTGCCAATATTACAGAATCAGGAATTTCAAAGCAGCACTTGAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGTGATAACATATATCAGGTATTGGCAAGCAGTGAGTCTGGTGATGTTTGTCTCCCAGCTGTGAATGATCCTTATTGTTTGTCCCATATGGGTGAGGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATCGTGACATGAAAGGAATGACTTTGTGTGTTGTTTATTTATCAAACCCTAAAATCATTGAACCTGAATTTACTACTGTCATAATTGTTAATTACACAAAGTGTACATTCCAGATACACCACCATGGCACAGTAATTTCCTTTAAAGATGAAGATTGGCATGACATAATGTCAAATTTAGAATGTGGAGACAATGTGGAGATTTTTGTGAATTTCGGTAATGGATTGGTGGTCAAGAACACAGCGGTGTATCTGATATGTGGTGAATCAAAAGACATGGAAAAAGCGTCTGAGCCAAAGAAACATGGTCTCATTAGATTCGTAAAGAAAGTTGTAATGTGA 2943 0.3826 MDNASSSYKLQRRYDVLINFTGEDIPKKIVSHLNSALSTVGLTTFLHHPNAVKSTHIQEPILSRCRVAIVVFTQTYSQSAWCLHQLQQIIKWQETYCRHVLPVYYEIQPSDVRLQMGDFGKALKATARQTFSGQELEHGMSRWRHALTKATNFFGWDESNHRSDAELVDKIVKSVVNLPILSATKFPVGLQSRVEDLIRTIKKKSNEVYMIGIVGQRGSGKTTLAKAIYNQIHWIFNKKSFIENISQVIEISGQLRLQEQLLLDILNQKVEIPSIDVGRSIIRERLSGKRVLIVLDDLPGNDELWNCSHNWFSEGTVIIITALPGVMCNYPVDSVFSIKLMNKEESLELLSWHAFREAKPKEEYEDLARRVVSCCEGLPLALEVVGSCLFEKTKEEWNSLLFKSPIAVVDIYTGDIYTGEEIIKVIIEGSLNEMEKDIFFDICCFFVGKSKACVTKILNSCGVDADIGIRVLIERNLIKINKNNKFGMHPWLQEIGINIIYLKLTLNLEKNGLPSKYGTEAMPWLPVKLLTSIESVRPTEISGYLLNKIRWLSSHGLSSECLPNNFYEDKATAIDLKRSLLRFLWKTPQVLRSLKVLNLGHSNHLTTTPDFTGLPSLEQLVLKYCSRLSKVHRSIGSLNSLTLLNSKYCTSLNNLPTEIYDLKSLRTFILSGCSKIHIMDKDIAKLESLITLIAENTAVKRVPFSIVSSKGIGYMSLRGFEGLSHNFFPSIIRSWMSSTMNPISYIHSFCMDMEDNTIDIAPLLSTLANIRNVLVACDTEFQLSKQVKNILVEYFANITESGISKQHLRCSLIGVGAYHQFFNAVSDNIYQVLASSESGDVCLPAVNDPYCLSHMGEGHSVSFVVPEDRDMKGMTLCVVYLSNPKIIEPEFTTVIIVNYTKCTFQIHHHGTVISFKDEDWHDIMSNLECGDNVEIFVNFGNGLVVKNTAVYLICGESKDMEKASEPKKHGLIRFVKKVVM 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01416 980 Gene3D - 11 174 IPR035897 -
Vimu9g01416 980 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 690 IPR044974 GO:0006952
Vimu9g01416 980 Gene3D Ribonuclease Inhibitor 529 794 IPR032675 -
Vimu9g01416 980 Gene3D - 175 325 IPR027417 -
Vimu9g01416 980 Gene3D - 340 406 IPR042197 -
Vimu9g01416 980 Pfam TIR domain 14 182 IPR000157 GO:0007165
Vimu9g01416 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 413 IPR027417 -
Vimu9g01416 980 PRINTS Disease resistance protein signature 210 225 - -
Vimu9g01416 980 PRINTS Disease resistance protein signature 285 299 - -
Vimu9g01416 980 PRINTS Disease resistance protein signature 375 389 - -
Vimu9g01416 980 PRINTS Disease resistance protein signature 589 605 - -
Vimu9g01416 980 SMART till_3 13 153 IPR000157 GO:0007165
Vimu9g01416 980 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vimu9g01416 980 SUPERFAMILY "Winged helix" DNA-binding domain 421 503 IPR036390 -
Vimu9g01416 980 SUPERFAMILY L domain-like 535 720 - -
Vimu9g01416 980 Pfam NB-ARC domain 192 400 IPR002182 GO:0043531
Vimu9g01416 980 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01416 Vimu-Chr9 22663564 22667333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01416 3 676 WRKY Transcription Factor Family AT4G12020 26.866 1.83e-53 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01416 - - var:108346736 1417.14