Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01411 ATGGATAATGCCTCCTCATCAAACAAACTGCCACGGCGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCCACAGAAAATTTGTTTCTCATCTCAATTCTGCCTTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCCCAATGCAGTGAAGTCGACTCACATCCAACAACCTATTCTCAGCCACTGTCATGTAGGAATTGTTGTTTTCACCCAAACCTATTCTAAATCAGCTTGGTGCCTTGATCAGCTTCAACAAATCATCAAATGGCACGAAACTTATTGCCGACATGTTCTTCCCGTTTATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGCCTTGAAGGAAACTGCACAACAAACATTTTCAGGAGAAGAACTGGAGGATGGAATGTCCAGGTGGAGGCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGAAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTATTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTAGAAGATCTGATTCGAACTATCAATAGTAAATCCACCGAAGTTTGTTATATAGAGATACGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGACATTCAAGAAGAAAAGTTTTATTGAAAATATTTCACAAGTTAGCGGAATAAGAGGGCGTCTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAGCATTGATTTGGGAAGAAGTATGATTCGGAAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATGTTTCTTACTTTAGTTTATTCGACCTATGGAACTGTGGTAAATGGTTCGGTGAAGGAACTGTAATAATCGTTACATCAACATTTGAAAAAGTGGTGAAAGATCATGCTAATTCTTTCTTTCGAGTAGAGCCATTGAACGCAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACGAAGATCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGATTACCTCTAGCTCTTGAAGTCATTGGAAGTACTTTGTTTGAAAAGACCAAAGAAGAATGGAACAGTTTACTGTTTAAATTTCGGATAGATGGCTTGCGTCCTGATCCAGAGATAATAAAAGTAAGCATCGAAGGTTCATTGAATGAAATGGAAAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTGAGAGCAGAGCCTATGTTAGAAAGATCCTAAATGGCTGTGGAGTGGACGCTGATATTGCAATAAGAGTTCTCATCCAACGTAACCTCATCAAAATTAACAGGAACAACAAATTAGGAATGCATCCTTTGCTACAAGAAATCGGAATAAAAATTATTTATGAAAATTCAGTAAAGGATATTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATGCAAAATATGGGACAGAACCCTTGCAGTGGTTGCCTGTGGAACCACCTTCAGTTCGCATTGCCCTTGGAGAACCGATTGTAAATTCTGAGTACCTTCTTAAGAAGCTAAGATGGATCAGATTGCATGGGTTTTCTTCAGAATGTCTACCTAACAACTCTTATGAGGATAATTCAACGACGATTGATTTAAAACGCAGTCTTCTTCGATTTGTCTGGAAAACACCCCAGGTTTTGAGATCACTAAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTACAACTCCTGACTTTACCGGATTACCAAGTCTTGAACATCTCATTTTAAAATATTGTTCGAGATTGAGCAAAGTACACCGATCTATTGGATCACTCAAAAGTCTTATACTGCTAAATTTGAAATACTGTACAAGTCTATACAATCTTCCAAAAGAGATATATGACTTGAAATCTTTAAGAATCTTTATTCTCTCTGGTTGTTCAAAGATTCACATAATGGATAAAGATATAGTGCAGATGGAATCCTTGATAACTCTAATTGCTGGAAACAAAGCTGTGAAAGAAGTTCCTTTTTCAATTGTAAGCTCAAAAAACATTGGATATATATCCCTACAAGGATTTGAGGGATTATCTCATAATTTTTTTCCTTCTATCATTCGGTCTTGGATGTCAGCAACAATGAGTCCCATATCTTATATTCATTCATTGTGCATGGGTATCGATAATAGTTGGGAAGATATTGGACCATTGCTTAGCAGCCTGGAAAATCTTCGAAGTGTTTTGGTGCAATGTCACAACGAGTTTCAACTATCTGAGCAAGTAAAATTTATTCTGGTAGACTATTTTTCAAATATTACCGAATCAGGAATTTCAAAGCAGCACTTGAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGTTGTCAGCGATAACATATATCAGGTATTGTCAAGGAGTGAGTCGTGTGATGTTTGTCTCCCAGCTGTGAATGATCATTATTGTTTGGCCCATATGGGTGAAGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTGTTTATTTATCAACTCCTAAGATCATTGAACCTGAATTTACTACTATCGTAATTGTTAATTACAATAAGTGTACATTCCAAATACACAACCATGGCACAGCAATTTCCTTTAAAGAGGAAGATTGGCATGGCATAATGTCAAATTTAGAATGTGGGGACAATGTGGAGATATTTGTGAACTTTGGTAATGGATTGGTGGTAAAGAACACAACGGTGTATCTGATATGGGGTGAAGCAGAGAACATGGAAAAACCGTGTTCTTTCATTGGTGTTGGAGCATACCATCAATTCTTCAATGTTGTCAGCCATACGTATATGAGAGTCGGTCGATCGGGTAAGACTGACTGCTACGTTGAGTTGACTGAGTGGGTAAGGTGCAGAAAAGAGCTTTATTACCATTCGGTATGTCAGGACAGTAGTATTGCTTTCTCTTCTACCTCCATGGATATCGCCTCATCATCATACAAACTATCACGGAAGTACGATGTGTTCATCAACTTCACTGGAGAAGACATCCATAGAAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTACTGTTGTGAAGTCATCTCACATCCAAGAATCTATTCTCAGCCACTGTCGGGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGGTGTCTTCATCAGCTTCATCAAATCATCAAATGGCACGAAACTTATTGCCGACATGTTCTGCCTGTATATTATGAAATCCAACCTTCTGATGTACGTCTTCAGAATGGCAACTGCACAACAAGCATTTTCAGGACAAGAATTGGAGCATGGAATGTCCAGGTGGAGGCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACCAGTGGACAAAATTGTTAAGAGCGTTATTAATTTATCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCAAGTGGAAGATCTGATTCGAACTATCAAAAATAAATCCAATGAAGTTTATATGATAGGGAAAGGTGGAGAGGAAGGATCGGGTAAAACCACTCTGGCTAAAGCCATCTACAATCAAATTCATTGGAAATTCAATAAGAAAAGTTTCATTGAAAATATTTCACAAGTTAGCGAAATAAGAGGGCAACTTCGTTTACAAGAAAAACTCCTTTTAGATGTCGTAAAACAAAAGGTGGAGATTCCTAACATTGATGTGGGAAGAAGTATCATTCGGGAAAGACTTTCTGAGAAAAGGGTACTCATTGTACTTGATGATTTGCCTGCCAATTATGAACTTTTAGCACTATGGAATTATAGTCATAATTGGTTCGGTGAAGGAACTGTAATAATCATTACAATAACAGAGTTCGGCGTAATGAGTAAATATCCAGTTGATTCTGTATTTCGGATAAAGCTAATGAACGAAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACGAAGATCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGATTACCTCTAGCTCTTGAAGTCATTGGAAGTACTTTGTTTGAAAAGACCAAAGAAGAATGGAACAGTTTATTGTTTAAATTTCCGATCACGATGGTTGAAATGCGTACTAGCAGAGCCTATGTAAGGAAGATCCTAAATGGGTGTGGAGTAGACGCTGATATTGCAATAAGAGTTCTCATCCAGCGTAACCTCATCAAAATTAACAAGAACAATAAATTTGGAATGCATCCTTTGCTACAAGAAATCGGAATAAAAATTATTTATGAAAATTCAGGAAAGGATCTTTGGAAGAACAGGGGACTGTGGTTTGATTATGATGTGCCAGAAACCTTGCAGTGCTTGCCTGTGGAACCACCTTCAGTTCGCATTGCCTTTGGAGAACCGATTGTAAATTCTGAGTACCTTCTTAAGAAGCTAAGATGGATCAGATTGCATGGGTTTTCTTCAGAATGTCTACCTAACAACTCTTATGAGAATGATTCAACAACGGTTGATTTAAAACGCAGTCTTCTTCGATTTATGTGGAAAACCCCCCAGGTTTTATTACCAGCCACAGTCAATGATCCTTATTGTTTGGCCCATATGGGTGATGGACACTCTGTTTCTTTCATTGTTCCTGAAGATCGTTACATGAAAGGAATGACTTTGTGTGTTGTTTATTTATCAACTCCTAAAATCATTGAACCTGAATTTACTACTGTCGTAGTTATTAATTACACAAAGTGTACATTCCAGATACACAACCATGGCACAGTCATTTCCTTTAAAGATGAAGATTGGCATGACATAATGTCAAATTTAGAATCTGGAGACAATGTAGAGATTTTTGTGAATTTCGGCAATGGATTAGTGGTCAAGAACACCACGGTTTATCTCATATGTGGTGAATCAATGAACATGAGAAAAGCTTTTGAGCCAAAGAAACATGGTCTCATTAGATTCGTCAAGAAACTTGTAATGTGA 5124 0.3811 MDNASSSNKLPRRKYDVLINFTGEDIHRKFVSHLNSAFSTVGLTTFLHHPNAVKSTHIQQPILSHCHVGIVVFTQTYSKSAWCLDQLQQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGKALKETAQQTFSGEELEDGMSRWRHALTKAANFFGWDERNHRSDAELVDKIVKSVINLPVLSATKFPVGLQSHVEDLIRTINSKSTEVCYIEIRGEEGSGKTTLAKAIYNQIHWTFKKKSFIENISQVSGIRGRLRLQEQLLLDVLKQKVEIPSIDLGRSMIRKRLSGKRVLIVLDDVSYFSLFDLWNCGKWFGEGTVIIVTSTFEKVVKDHANSFFRVEPLNAEESLELLSWHAFREAKPKEEYEDLARRVVSYCGGLPLALEVIGSTLFEKTKEEWNSLLFKFRIDGLRPDPEIIKVSIEGSLNEMEKDIFLDICCFFVGESRAYVRKILNGCGVDADIAIRVLIQRNLIKINRNNKLGMHPLLQEIGIKIIYENSVKDIGKNRRLWFDKDAKYGTEPLQWLPVEPPSVRIALGEPIVNSEYLLKKLRWIRLHGFSSECLPNNSYEDNSTTIDLKRSLLRFVWKTPQVLRSLKVLNLSHSKHLTTTPDFTGLPSLEHLILKYCSRLSKVHRSIGSLKSLILLNLKYCTSLYNLPKEIYDLKSLRIFILSGCSKIHIMDKDIVQMESLITLIAGNKAVKEVPFSIVSSKNIGYISLQGFEGLSHNFFPSIIRSWMSATMSPISYIHSLCMGIDNSWEDIGPLLSSLENLRSVLVQCHNEFQLSEQVKFILVDYFSNITESGISKQHLRCSLIGVGAYHQFFNVVSDNIYQVLSRSESCDVCLPAVNDHYCLAHMGEGHSVSFVVPEDGDMKGMILCVVYLSTPKIIEPEFTTIVIVNYNKCTFQIHNHGTAISFKEEDWHGIMSNLECGDNVEIFVNFGNGLVVKNTTVYLIWGEAENMEKPCSFIGVGAYHQFFNVVSHTYMRVGRSGKTDCYVELTEWVRCRKELYYHSVCQDSSIAFSSTSMDIASSSYKLSRKYDVFINFTGEDIHRKFVSHLNSVLSTVVKSSHIQESILSHCRVAIVVFTQTYSQSGVFISFIKSSNGTKLIADMFCLYIMKSNLLMYVFRMATAQQAFSGQELEHGMSRWRHALTKAANFFGWDESNHRSDAEPVDKIVKSVINLSVLSATKFPVGLQSQVEDLIRTIKNKSNEVYMIGKGGEEGSGKTTLAKAIYNQIHWKFNKKSFIENISQVSEIRGQLRLQEKLLLDVVKQKVEIPNIDVGRSIIRERLSEKRVLIVLDDLPANYELLALWNYSHNWFGEGTVIIITITEFGVMSKYPVDSVFRIKLMNEEESLELLSWHAFREAKPKEEYEDLARRVVSYCGGLPLALEVIGSTLFEKTKEEWNSLLFKFPITMVEMRTSRAYVRKILNGCGVDADIAIRVLIQRNLIKINKNNKFGMHPLLQEIGIKIIYENSGKDLWKNRGLWFDYDVPETLQCLPVEPPSVRIAFGEPIVNSEYLLKKLRWIRLHGFSSECLPNNSYENDSTTVDLKRSLLRFMWKTPQVLLPATVNDPYCLAHMGDGHSVSFIVPEDRYMKGMTLCVVYLSTPKIIEPEFTTVVVINYTKCTFQIHNHGTVISFKDEDWHDIMSNLESGDNVEIFVNFGNGLVVKNTTVYLICGESMNMRKAFEPKKHGLIRFVKKLVM 1707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01411 1707 Gene3D - 1180 1340 IPR027417 -
Vimu9g01411 1707 SUPERFAMILY "Winged helix" DNA-binding domain 416 515 IPR036390 -
Vimu9g01411 1707 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Vimu9g01411 1707 Gene3D Ribonuclease Inhibitor 539 820 IPR032675 -
Vimu9g01411 1707 Gene3D - 10 178 IPR035897 -
Vimu9g01411 1707 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Vimu9g01411 1707 PRINTS Disease resistance protein signature 286 300 - -
Vimu9g01411 1707 PRINTS Disease resistance protein signature 377 391 - -
Vimu9g01411 1707 PRINTS Disease resistance protein signature 211 226 - -
Vimu9g01411 1707 PRINTS Disease resistance protein signature 590 606 - -
Vimu9g01411 1707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1177 1415 IPR027417 -
Vimu9g01411 1707 Pfam TIR domain 14 176 IPR000157 GO:0007165
Vimu9g01411 1707 SUPERFAMILY L domain-like 540 777 - -
Vimu9g01411 1707 SUPERFAMILY Toll/Interleukin receptor TIR domain 1030 1162 IPR035897 -
Vimu9g01411 1707 Gene3D - 1037 1179 IPR035897 -
Vimu9g01411 1707 Gene3D - 179 339 IPR027417 -
Vimu9g01411 1707 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 693 IPR044974 GO:0006952
Vimu9g01411 1707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 437 IPR027417 -
Vimu9g01411 1707 SMART till_3 14 154 IPR000157 GO:0007165
Vimu9g01411 1707 Gene3D - 1350 1427 IPR042197 -
Vimu9g01411 1707 Gene3D - 342 421 IPR042197 -
Vimu9g01411 1707 ProSiteProfiles TIR domain profile. 1014 1185 IPR000157 GO:0007165
Vimu9g01411 1707 Pfam NB-ARC domain 192 406 IPR002182 GO:0043531
Vimu9g01411 1707 Pfam NB-ARC domain 1198 1427 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01411 Vimu-Chr9 22615371 22625322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01411 8 707 WRKY Transcription Factor Family AT4G12020 27.660 4.62e-61 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01411 - - var:108346736 1380.54