Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01398 ATGTTGATGGACCTCTCCGTTTTTGTGGATAACTTCTACAATGAAAAGTGGATTGTTGATGATACTAAATGCTTCATGCTATATTTTAACTCTTACCCATGTCTGCAAACTAAATATAAAATTTTGAGAGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGCGAACATATGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGATTGTAATCTTTACCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAATGCTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTTTGAAAATTGCCGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGAGCCCCTTCTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATATCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCGGATTCCTCTGCTTTCACCATCAGGGCAAATAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTTCCACCTGTGAAACTTTCTAACATCATTCCTAATGCTAGTTCGGAAGCTATAGACTTGATGACACAACTGCTACATTGGGACCCATCAAGAAGGCCAGATGCAGATCAGTCATTACAACATCCATTTTTCCATGTGAATGCATGGGTTCCTTATCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTCGAGCTGAAACTGCAGGATTTTGGCCCCGAACCCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTGTTTCAAACATAGATGTGGTCCAAAATGTATCGCAGGGTGTAAGAGAGAATATGCTATTTTGCTCAGATTTTAATGATCATTCAGACCAGTCAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTGCTAACTCAGCAGAGACTTCACTGTCACTGTCATTCAGTTCAGTGCAACAACATCCGCCAGTTGGAGTTCCACAGTCTACGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCACTGTCTTCTCCCTTCCAGCGCGGCCACTGCCTTTGA 1371 0.407 MLMDLSVFVDNFYNEKWIVDDTKCFMLYFNSYPCLQTKYKILRELGDGSCGHVYKARDMRTYEIVAVKKLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEDCNLYQLIKEREKPFSEEEIRCFVRQMLEGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRAPSYTPAVDMWAVGAILAELFTLTPLYPGESEIDQLYKIYGILGMPDSSAFTIRANNSQLLDLVSHEIVPPVKLSNIIPNASSEAIDLMTQLLHWDPSRRPDADQSLQHPFFHVNAWVPYPLSDPLELKLSSKRAKPNLELKLQDFGPEPDDCFLGLTLAVKPSVSNIDVVQNVSQGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVANSAETSLSLSFSSVQQHPPVGVPQSTGFSFQPLQPNILTTPFLALSSPFQRGHCL 456
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01398 456 SMART serkin_6 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01398 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vimu9g01398 456 Gene3D Phosphorylase Kinase; domain 1 29 106 - -
Vimu9g01398 456 Gene3D Transferase(Phosphotransferase) domain 1 107 305 - -
Vimu9g01398 456 SUPERFAMILY Protein kinase-like (PK-like) 33 305 IPR011009 -
Vimu9g01398 456 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 328 - -
Vimu9g01398 456 CDD STKc_MAK_like 39 304 - -
Vimu9g01398 456 FunFam Probable serine/threonine-protein kinase DDB_G0268078 103 311 - -
Vimu9g01398 456 Pfam Protein kinase domain 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01398 456 ProSiteProfiles Protein kinase domain profile. 39 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu9g01398 Vimu-Chr9 22482444 22488297 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01398 42 304 MAP Kinase Gene Family AT4G01370 38.112 4.64e-56 188
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vimu9g01398 Pkinase 1.7e-63 CL0016