Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01396 ATGGCACTTATCAAATTCAAAGAATCAATATCGAGTGACCCAAATGGGATCTTGCTTTCTTGGAATACTTCTACTCACTTCTGTAATTGGTATGGAATCACATGCCATCCCACACTTCCAAGGGTTACTCAGCTGAACTTGCAAGGGCACAAGTTCAAAGGGTACATATCTCCTCACATAGGTAATCTCTCTTACATCAGAAAATTTGTACTTGGAAACAACAGTTTCTATGGCAATATCCCACTAGAAGTGGGAAGATTGTCCCAACTGCAGAAATTCAATGTTGAAAATAACACATTGGGAGGAGAAATTCCTTTGAATTTGACGCATTGTACTCAACTCAAAATTTTATATTTGTATGGAAACAATCTGAAAGGAAAAATACCTATTACAATCGGATTGCTCCGGAACATGCAGTTTTTGAGCTTTGGTCGAAATCAGTTAACAGGAGAAATTCCATCTTCCATTGGGAATCTTTCTTCAATAACATATCTATCACTTACTTTTAACAATTTAGAGGGAGATATTCCACCAGAAATATGTCATCTCAAAAGCTTAACTATTATAGCTTTAGTCACTGAAAATCAACTTAGTGGCTCTCTTCCACCCAACATGTTCCACACCCTCCACAATCTTCAGGGACTTACACTTGCTAACAATCAATTCTCAGGTCCAATCCCACCTTCCATTGCAAATGCATCCACCCTCTTACGCCTTGCCCTCTCTACAAATCATTTTGTGGGAAGAATTCCAGATCTTGGAAAACTACATGAACTTTATCACCTAAGCTTGGGTCAAAACAATTTAGGTTACAATTCAACTAATGATTTGGAGTTTTTAAAATCATTGGTAAATTGTACTAAGTTGGAAATATTAGCTCTATCTTACAATAGTTTGGGAGGTCAATTATCAAATTCTTTGGGAAATTTGTCGACTCAACTAAGTCAACTATATCTCGGATACAACGAGATATCTGGAGAAATCCCTGAGGCAATAGGAAATTTAATTGGCTTAACTCTCTTGACAATGTACAATAACCACTTTGATGGTATTATCCCAACAACTTTTGGAAACTTTAAAATGCTTCGAGTGTTAGGATTAGGGGGAAACAAGTTGTCAGGAAATATAGAACCCTTCATTGGAAACTTGAGTCAATTGTTTTATTTGAATCTACGAGCAAATCGATTTGAAGGGAGTATTCCTCCAAGTATAGGAAATTGTCAACTGCTACAACATTTTGATCTTTCAGAGAACTATCTAACAGGAACAATACCACAAGAGCTTTTTAATCTTACCTCTCTATTTGACAAGTTGGATTTGTCATATAATTCCTTGAGTGGTAGTATACCAGATGAAGTGGGAAATATAAACAATATCGACTTTCTAGATATGTCAAACAATAATATATCTGGTCACATTCCTCTTGGTGTTGGAAAATGCATAATGTTAGAGAGCCTCTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCTTCTTTGGCATCACTTAAAAGCATTATATTTTTGGACCTGTCACAAAACCATTTGTCTGGATCAATTCCAAATTTCCTGCAAAACCTTTCTTTCCTACAATATTTGAATGTATCTTTTAATATGTTGGAAGGTGAGGTACCCACTGAAGGTGTCTTTCGGAATGTAAGTGCATTGGGGGTGATTGGAAACAGTAAGCTTTGTGGAGGTATTACTGAATTGCATCTGCCACCATGCCCTGTTAAAATTAAGAAACATGCAAAACACCACAAGTTCAGATTGATAGTAATTATATTAAGTGTAATTGTTTTTCTCATTGCACTACTATCTGCCTTAACTATCTATTGGTCGAGGAAAAAGGGAAAGAAACCTTCCCTTAATTCCTCAACAATTCACCAATTGGCTAATGTTTCCTACCAAAGCTTGTACAATGGAACTGATGGGTTCTCAACTACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGAGCTCGAAGACAGAGTTGTTGCCGTAAAGGTTCTAAACGTGCAAACAAAAGGAGCTCACAAGAGCTTCGTGGGAGAATGTAATGCACTAAAAAATATTAAGCATCGAAATCTTGTTCAGATTTTGACATGCTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCCTGGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCATCCAAGAACATTGAGCCTTAAACAAAGATTAAGTATAATGATTGACGTAGCTTCTGCATTACAATATCTTCATCATGAATGTGAGCAGTCGATCATTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGAGATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCAACAATCCAAGGTATTACCTCCAAACAATCAAGTACACTTGCAATAAAGGGGACTGTTGGCTATGCTCCTCCAGTGTCAACTTCTGGCGACATGTACAGCTTTGGAATTATTTTGCTGGAAATGCTTACTGGGAGAAGACCTACAGATGAAATGTTTGAAGATGGTCAAAATATTTGTGACTTTGTTGCAATTTCCTTTCCCAGTAAACTTTTTCAAATTTTGGATCGGCGACTTATTCCAATTGAGGAAAATGATTGGAATCTTAATCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTAAAATTGGACTTGCCTGTGCCGTGGAATCCCCGAAAGAAAGAATGGATGTGGTTGATGTCAGCAGGGAGCTTCATCGAATTCAGAATGCCGTTTTTGGCCAACCCGGTCCGTCACGGGTTCAGGCCGGATTGGGTTTGAAAAATACAACCCACTTATATGCGGGTCAGATTTCAACCCGGCTTATGCGGGTTGAACCTGTGGCCCCGGGTTCAAGTTTTTCTGGCTCGCTAATAAATGAGCCAGGTTGGGTTGGCTCACTAAGTGACCAACCCATGGTGGGCCGGGCCGGGCCGAATGTCCCTATTGATGGTCGTTATTCCTTCTTAATGGTTGTGCCACGCTCAATCGCTGCTCGACTGTTTCCTTTTCTCATAGGTCCTCCGGCTTGCTCGGTGTGGGATAAGTGTATGACCCTCTTGGCCATACGAAAGATCGTAACTCCTGACAGAAGTTCCGAAAAAAGGAAAGAAACAAAAACATCTCAGGAACTTCAGGAGACTACTTCAAGGCATCAAGACACCATTTTTGCAAGGGATTGCTTCAAATGTGTACGTTTAGATGACTATGAATCCCATAGACTTCAATCCCACCGACCAAATACAATTTCCCTCTCCCTCGTCATCATTGACAATCCTCGCAAAAGTGAGTTGTGGGAGCAACTCAGCCACGTGTCTCTCCTACTTGTCACTCTCCAAATCCAAACGCACCACGTAGAACGGTTCCCGGGTGGTGATGTACAAGCCGACGTGGAAGAAAGTACCCTGCTGGAGGCAACTGTCATTGAGGACAACATGGAACCCGTGGAAGCGCCTCCCGAAGTGGTGATTGAGGACTAA 3561 0.3979 MALIKFKESISSDPNGILLSWNTSTHFCNWYGITCHPTLPRVTQLNLQGHKFKGYISPHIGNLSYIRKFVLGNNSFYGNIPLEVGRLSQLQKFNVENNTLGGEIPLNLTHCTQLKILYLYGNNLKGKIPITIGLLRNMQFLSFGRNQLTGEIPSSIGNLSSITYLSLTFNNLEGDIPPEICHLKSLTIIALVTENQLSGSLPPNMFHTLHNLQGLTLANNQFSGPIPPSIANASTLLRLALSTNHFVGRIPDLGKLHELYHLSLGQNNLGYNSTNDLEFLKSLVNCTKLEILALSYNSLGGQLSNSLGNLSTQLSQLYLGYNEISGEIPEAIGNLIGLTLLTMYNNHFDGIIPTTFGNFKMLRVLGLGGNKLSGNIEPFIGNLSQLFYLNLRANRFEGSIPPSIGNCQLLQHFDLSENYLTGTIPQELFNLTSLFDKLDLSYNSLSGSIPDEVGNINNIDFLDMSNNNISGHIPLGVGKCIMLESLYLQGNSLQGIIPSSLASLKSIIFLDLSQNHLSGSIPNFLQNLSFLQYLNVSFNMLEGEVPTEGVFRNVSALGVIGNSKLCGGITELHLPPCPVKIKKHAKHHKFRLIVIILSVIVFLIALLSALTIYWSRKKGKKPSLNSSTIHQLANVSYQSLYNGTDGFSTTNLIGSGNFSSVYKGTLELEDRVVAVKVLNVQTKGAHKSFVGECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEHPRTLSLKQRLSIMIDVASALQYLHHECEQSIIHCDLKPSNVLLDDEMIAHVSDFGIARLLSTIQGITSKQSSTLAIKGTVGYAPPVSTSGDMYSFGIILLEMLTGRRPTDEMFEDGQNICDFVAISFPSKLFQILDRRLIPIEENDWNLNPNVEKCLVSLFKIGLACAVESPKERMDVVDVSRELHRIQNAVFGQPGPSRVQAGLGLKNTTHLYAGQISTRLMRVEPVAPGSSFSGSLINEPGWVGSLSDQPMVGRAGPNVPIDGRYSFLMVVPRSIAARLFPFLIGPPACSVWDKCMTLLAIRKIVTPDRSSEKRKETKTSQELQETTSRHQDTIFARDCFKCVRLDDYESHRLQSHRPNTISLSLVIIDNPRKSELWEQLSHVSLLLVTLQIQTHHVERFPGGDVQADVEESTLLEATVIEDNMEPVEAPPEVVIED 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01396 1186 Pfam Leucine rich repeat N-terminal domain 2 35 IPR013210 -
Vimu9g01396 1186 Gene3D Ribonuclease Inhibitor 111 204 IPR032675 -
Vimu9g01396 1186 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 729 943 - -
Vimu9g01396 1186 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 37 283 - -
Vimu9g01396 1186 SUPERFAMILY Protein kinase-like (PK-like) 621 932 IPR011009 -
Vimu9g01396 1186 ProSitePatterns Protein kinases ATP-binding region signature. 653 676 IPR017441 GO:0005524
Vimu9g01396 1186 Gene3D Transferase(Phosphotransferase) domain 1 729 942 - -
Vimu9g01396 1186 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Vimu9g01396 1186 PANTHER OS04G0122200 PROTEIN 181 936 - -
Vimu9g01396 1186 SMART serkin_6 647 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01396 1186 Gene3D Ribonuclease Inhibitor 276 578 IPR032675 -
Vimu9g01396 1186 Pfam Leucine rich repeat 483 541 IPR001611 GO:0005515
Vimu9g01396 1186 FunFam LRR receptor-like serine/threonine-protein kinase EFR 618 728 - -
Vimu9g01396 1186 FunFam Inactive leucine-rich repeat receptor-like protein kinase 284 577 - -
Vimu9g01396 1186 SUPERFAMILY L domain-like 312 567 - -
Vimu9g01396 1186 ProSiteProfiles Protein kinase domain profile. 647 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01396 1186 SMART LRR_typ_2 335 358 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 431 456 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 504 527 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 87 111 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 528 553 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 159 183 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 209 233 IPR003591 -
Vimu9g01396 1186 SMART LRR_typ_2 383 407 IPR003591 -
Vimu9g01396 1186 Pfam Protein kinase domain 649 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01396 1186 MobiDBLite consensus disorder prediction 1058 1078 - -
Vimu9g01396 1186 SUPERFAMILY RNI-like 45 326 - -
Vimu9g01396 1186 Gene3D Phosphorylase Kinase; domain 1 627 728 - -
Vimu9g01396 1186 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Vimu9g01396 1186 Gene3D Ribonuclease Inhibitor 205 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01396 Vimu-Chr9 22429884 22437109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01396 2 940 Receptor kinase-like Gene Family AT3G47570 43.425 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu9g01396 Pkinase 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01396 - - vun:114166412 1411.36