Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01393 ATGAAGCCATCTTCTCTTTGGTTGCTTGCTTTTTGGTTTATATATGTTCCCCTGTTTTTCCACTTTAAATGCAACTCCAAACACAATGTTTTTGCTCTAGAAAATGAGATCGATCATATGGCACTTATCAAATTCAAAGAATCAATATCGAGTGACCCAAATGGGATCTTGCTTTCTTGGAATACTTCTACTCATTTCTGTAATTGGTATGGAATAACATGCCATCCCACACTTCCAAGGGTTACTGAGCTGAACTTGCTAGGGCACAAGTTGAGAGGGTACATATCTCCTCACATAGGTAATCTCTCTTACATGAGAACATTTGAACTTGGAAACAATAGTTTCTATGGCAATATCCCACTCGAAGTGGGAAGATTGTCTCAATTGCAGAATTTCAGAGTTGGAAATAACACATTGGTAGGAGAAATTCCTTTGAATTTGACACATTGTGCTCAACTCAAAACTTTATATTTGTATGGAAACAAGCTGAAGGGAAAAATACCTACTAAAATCGGATTGCTCCGGAACATACAGTTTTTGAACTTTGGTCAAAATCATTTAACAGGAGAAATTCCATCTTCCATTGGGAATCTTTCTTCAATAACATATCTATCATTTGGTGATAACAATTTAGAGGGAGATATTCCACCAGAAATATGTCATCTCAAGAGATTGATGATTGTAACTTTCGGTATTAACAAACTGAGTGGATCATTTCCTTCCTGTCTTTATAATATGACATCTCTTACTGGAATCTCAGTTGTTGAAAATCAACTTAGTGGCTCTCTTCCACCCGACATGTTCCACACCCTCCACAATCTTCGGGGACTTATACTTTCTAACAATCAATTCTCAGGTCCAATCCCACCTTCCATTGCAAATGCATCCACCCTCTTACTCCTTGCCCTCTCTTATAACTACTTTGTGGGAAGAATTCCAAGTTTTGGAAACCTACATGATCTTTATTCCCTAGATTTGTCTAAAAACAATTTAGGTTACAATTCAACTAACGATTTGCAGTTTTTAAAATCATTGGTAAATTGTACTAAGTTGAAAATCTTAAGTCTATCTTACAATAGTTTTGGAGGTCGTTTGCCAAATTCTTTGGGAAATTTCTCCACCCATCTATGTCAACTATATCTCGGATACAATGAGATATCTGGAGAAATCCCTGAGGCAATGGGAAATTTAGTTGGCTTAACTGTCTTATCAGTATTCAATACTCACATAGCTGGGAGTATCCCAACAACTTTTGGAAAGTTCAGAATGCTTGGAGTGTTAGTCTTAGGGGAAAACAAGTTGTCAGGAAAGATAGAACCCTTCATTGGAAACTTAAGTCAATTGTTTCATTTGAACCTACGAGCAAATCGATTTGAAGGGAGTATTCCTCCTAGTATAGGAAATTGTCAACTGCGACAATATTTAGATCTTTCAAAGAACAATCTCACAGGCACCATACCACTAGAGCTTTTTAATCTTACCTCTCTATTCATATTGGATTTGTCAAATAACTCATTGAGTGGCAGTATACCAGATGAAGTGGGAAATATACGCAATATTAACTTTCTAGATATGTCAAACAATCATATATCTGGTCACATTCCACTTGGTGTTGGAAAATGCGTAATGTTAGAGAGTCTCTATTTGCAAGGGAATTCTTTACAAGGAACCATACCATCTTCTTTGACATCACTTAAAAGCATTATATTTTTGGACCTGTCACAAAACCATTTGTCTGGATCAATTCCAAATTTCCTGCAAAACCTTTCTTTCTTACAGTATTTGAATGTATCTTTTAACATGTTGGAAGGTGAGGTACCCACTGAAGGTGTCTTTCGGAACGTAAGTGCATTGGGGGTCATTGGAAACAGTAAGCTTTGTGGAGGTATTTCTGAATTGCATCTGCCACCATGCCCTCTTAAAATTAAGAAACATGCAAAACACCGCAAGTTCAGATCGATAGTAATGATATTAAGTGTAGTTGTTTTCCTCATTGTACTATTATCTGCCTTAACTATCTATTGGTCGAGGAAAAAGGGAAAGAAACCTGCCCTTAATTCATCAACAATTCACCAATTGGCTAAAGTTTCCTACCAAAGCTTGTACAATGGAACTGATGGATTCTCAACTACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGAGCTCGAAGACAGAGTTGTTGCCGTAAAGGTTCTAAACCTCCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCAGAATGTAATGCACTAAAAAATATTAAGCATCGAAATGTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCCTGGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCATCCAAGAACATTGAGCCTTAAACAAAGATTAAGTATAATGATTGACGTAGTTTCTGCATTACAATATCTTCATCATGAATGTGAGCAGTCGATCATTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGAGATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCAACAATCCAAGGTATTACCTCCAAACAATCAAGTACACTTGCAATAAAGGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTGCTGAAGTGTCAACTTCTGGCGACATGTACAGCTTTGGGATTCTTTTGCTGGAAATGCTTACTGGGAGAAGACCTACAGATGAAATGTTTGAAGATGGTCAAAATATTTGTAACTTTGTTGCAATTTCATTTCCCAGTAAACTTTTTCAAATTTTGGATCCGCGACTTATTCCAATTGAGGAAAATGATTGGAATCTTAATCCAAATGTTGAAAAGTGCTTAGTTTCACTTTTTAGGATTGGTCTTGCCTGTGCCGTGGAATCACCAAAAGAAAGAATGGATGTGGTTGATGTCAGCAGGGAGCTTCATCGAATTCAAAATGCCTTTTTTGGTCGAGGCTCTGTTTTGGGAAATGATCCTTCAATCTTGTTATTGAGTGAAGGTGTTGATAATATTGAAGGTTGA 3099 0.373 MKPSSLWLLAFWFIYVPLFFHFKCNSKHNVFALENEIDHMALIKFKESISSDPNGILLSWNTSTHFCNWYGITCHPTLPRVTELNLLGHKLRGYISPHIGNLSYMRTFELGNNSFYGNIPLEVGRLSQLQNFRVGNNTLVGEIPLNLTHCAQLKTLYLYGNKLKGKIPTKIGLLRNIQFLNFGQNHLTGEIPSSIGNLSSITYLSFGDNNLEGDIPPEICHLKRLMIVTFGINKLSGSFPSCLYNMTSLTGISVVENQLSGSLPPDMFHTLHNLRGLILSNNQFSGPIPPSIANASTLLLLALSYNYFVGRIPSFGNLHDLYSLDLSKNNLGYNSTNDLQFLKSLVNCTKLKILSLSYNSFGGRLPNSLGNFSTHLCQLYLGYNEISGEIPEAMGNLVGLTVLSVFNTHIAGSIPTTFGKFRMLGVLVLGENKLSGKIEPFIGNLSQLFHLNLRANRFEGSIPPSIGNCQLRQYLDLSKNNLTGTIPLELFNLTSLFILDLSNNSLSGSIPDEVGNIRNINFLDMSNNHISGHIPLGVGKCVMLESLYLQGNSLQGTIPSSLTSLKSIIFLDLSQNHLSGSIPNFLQNLSFLQYLNVSFNMLEGEVPTEGVFRNVSALGVIGNSKLCGGISELHLPPCPLKIKKHAKHRKFRSIVMILSVVVFLIVLLSALTIYWSRKKGKKPALNSSTIHQLAKVSYQSLYNGTDGFSTTNLIGSGNFSSVYKGTLELEDRVVAVKVLNLQRKGAHKSFVAECNALKNIKHRNVVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEHPRTLSLKQRLSIMIDVVSALQYLHHECEQSIIHCDLKPSNVLLDDEMIAHVSDFGIARLLSTIQGITSKQSSTLAIKGTVGYAPPEYGMGAEVSTSGDMYSFGILLLEMLTGRRPTDEMFEDGQNICNFVAISFPSKLFQILDPRLIPIEENDWNLNPNVEKCLVSLFRIGLACAVESPKERMDVVDVSRELHRIQNAFFGRGSVLGNDPSILLLSEGVDNIEG 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01393 1032 Gene3D Ribonuclease Inhibitor 161 266 IPR032675 -
Vimu9g01393 1032 Gene3D Ribonuclease Inhibitor 267 336 IPR032675 -
Vimu9g01393 1032 SUPERFAMILY L domain-like 374 628 - -
Vimu9g01393 1032 Pfam Leucine rich repeat 544 602 IPR001611 GO:0005515
Vimu9g01393 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Vimu9g01393 1032 Gene3D Phosphorylase Kinase; domain 1 688 789 - -
Vimu9g01393 1032 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 76 341 - -
Vimu9g01393 1032 SMART LRR_typ_2 246 270 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 565 588 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 271 295 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 445 469 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 493 517 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 198 222 IPR003591 -
Vimu9g01393 1032 SMART LRR_typ_2 589 614 IPR003591 -
Vimu9g01393 1032 PANTHER OS04G0122200 PROTEIN 221 1005 - -
Vimu9g01393 1032 Pfam Leucine rich repeat N-terminal domain 41 74 IPR013210 -
Vimu9g01393 1032 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 790 1012 - -
Vimu9g01393 1032 Pfam Protein kinase domain 710 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01393 1032 SMART serkin_6 708 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01393 1032 Gene3D Transferase(Phosphotransferase) domain 1 790 1009 - -
Vimu9g01393 1032 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 644 - -
Vimu9g01393 1032 SUPERFAMILY L domain-like 38 331 - -
Vimu9g01393 1032 Gene3D Ribonuclease Inhibitor 37 152 IPR032675 -
Vimu9g01393 1032 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Vimu9g01393 1032 Gene3D Ribonuclease Inhibitor 337 639 IPR032675 -
Vimu9g01393 1032 FunFam LRR receptor-like serine/threonine-protein kinase EFR 679 789 - -
Vimu9g01393 1032 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Vimu9g01393 1032 SUPERFAMILY Protein kinase-like (PK-like) 685 1000 IPR011009 -
Vimu9g01393 1032 ProSiteProfiles Protein kinase domain profile. 708 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01393 Vimu-Chr9 22371817 22375210 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01393 35 1008 Receptor kinase-like Gene Family AT3G47570 44.569 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu9g01393 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01393 - - vun:114166412 1548.87