Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01371 ATGGATCCTGCTTCGAATTTCCAAGCTTCTGTTGCAGGATTCTTAGTGTTGCTCATTGCATACAAACTGTTTAGGTTCATCAGATCTCCTAAACAAAGAAAAGGAACCAATGTTCCCGAACCTCACGGTGCTTTACCTTTGATAGGGCACCTCTACCTTCTCAATGGTAGAATACCCTATTTCAGGACCTTCTCAGCCATGGCTGAGAAATATGGTCCAGTCTTCTGTGTCAAACTGGGTTGCCACCCCACCATAGTGGTGAACAACAGGGAAATTGCCAAAGAGTGTCTCACCATAAATGACAGAGCTTTTGCCTCAAGACCAAACACTTCTGGTGGTAGACTCATGGGTTACAACAATGCAATCTTTGGCCTTGCTCCTTACGGAAATTACTGGCGTGAGATCAGAAAAATGTCTGTTCTCGAGATTCTGTCAAGCCACAGGCTTGAGAAGCTGAAGCATGTTAGAGACAGTGAAACACTGTCTCTTGTGAAGGACTTGTACTCATCAATGACAGTGTCCTCTGAAAAGCACGTGAAGGACTCAAATGAAGTGGCTATAAGCAATCTGTTAGAGCACATGACGTTCAACATAATTGTGAGGATGATTGCTGGGAAGAGATTTGGAGGGGACACCGCCAACGAAGAAGATAATGAAGCATGGAAGCTGAGAAAATCCATAAAAGATGCCACGTATCTGTTTGGTGTTTTTGTGGTGGCTGATGCGATTCCTTCTCTTGGTTGGTTTGATTTCCAAGGTTACGTGAGTTTCATGAAAAGAACAGCTCAACAAACAGACCTTATTCTTGAGAAGTGGCTGCAAGAACATCTGAGAGAGAGAATGAGAGATGGTGAATGTGAAAGGGACTTCATGGATGTTATGATATCAACGTTCGAAGAGCAAGAAGATGTTTGTGGCTATAAGAAAGAGACTGTTATCAAAGCAACAGCGATGATGCTTATCCTTACTGCTGGAGGAAGCACAGCCATGACACTAACATGGGCACTCTCCTTGCTCGTAAACCATCCAAAGATTCTAAAGGCAGCCCTACAAGAGTTGGACACCCACGTAGGAAAAGAAAGATGGGTGGAAGAATCTGACATAAAAAACCTCAATTATCTGCATGCCATTATCAAAGAGACCCTTCGTTTGTACCCGCCAGCACCCTTAACAGGAATCAGGGAGGCAATGGAAGATTGCTCTTTGGCAGGGTATCATGTCCCAAAGGGAACACGGTTGCTTATTAACCTATGGAACTTGCAAAGGGACCCAGAAGTATGGCCTAACCCTAATGAGTTTCAGCCAGAGAGGTTCCTCACCACTCACAGAGACATTGATTTTATGAGTCAGGACTTTGAGTTGATTCCATTTAGCTTTGGAAGAAGGTCGTGCCCTGGCATGACCTTTGGGCTGCAAGTGACGCACTTGACCCTGGCTCGCTTGCTTCAAGGGTTTCATATTTTCACAAAGGATGGTGCTGACGTTGATATGACTGAAGGGTTAGGAGTGGCTTTGCCTAAGGAACAACAACTTCGACTTATTCTCCAACCTCGTCTTCCATTGGAGCTTTACCAAAGCCTTTGA 1584 0.4457 MDPASNFQASVAGFLVLLIAYKLFRFIRSPKQRKGTNVPEPHGALPLIGHLYLLNGRIPYFRTFSAMAEKYGPVFCVKLGCHPTIVVNNREIAKECLTINDRAFASRPNTSGGRLMGYNNAIFGLAPYGNYWREIRKMSVLEILSSHRLEKLKHVRDSETLSLVKDLYSSMTVSSEKHVKDSNEVAISNLLEHMTFNIIVRMIAGKRFGGDTANEEDNEAWKLRKSIKDATYLFGVFVVADAIPSLGWFDFQGYVSFMKRTAQQTDLILEKWLQEHLRERMRDGECERDFMDVMISTFEEQEDVCGYKKETVIKATAMMLILTAGGSTAMTLTWALSLLVNHPKILKAALQELDTHVGKERWVEESDIKNLNYLHAIIKETLRLYPPAPLTGIREAMEDCSLAGYHVPKGTRLLINLWNLQRDPEVWPNPNEFQPERFLTTHRDIDFMSQDFELIPFSFGRRSCPGMTFGLQVTHLTLARLLQGFHIFTKDGADVDMTEGLGVALPKEQQLRLILQPRLPLELYQSL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01371 527 CDD CYP82 72 518 - -
Vimu9g01371 527 Gene3D Cytochrome P450 23 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Vimu9g01371 527 Pfam Cytochrome P450 39 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 SUPERFAMILY Cytochrome P450 39 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PANTHER CYTOCHROME P450 82C3-RELATED 15 524 - -
Vimu9g01371 527 FunFam Cytochrome P450 82C4 28 516 - -
Vimu9g01371 527 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu9g01371 527 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01371 Vimu-Chr9 22039502 22042027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01371 39 524 Cytochrome P450 AT4G31940 48.687 9.55e-166 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01371 K17961 - gmx:100806378 836.639