Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01334 ATGTTTGTTCCAAAAGTGAACGAAAAGCTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCACGGGCAACCAGAGCACTTCATTGTTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATAGTTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACATTGAGGTAGAGTCAACTGAGTCCTTTCCCATCTCAGAAGAAATCAGAATCAAAGCACAGAGTTTAAGGGAACAAGAACGTAAGAGGATAGAACAGGAAGAGAAAAGATTGGAGAGAGAAAGGGAGAAGTGGAAAGAAATTGCAAATAAGAAAAATATATGTAAATCAAATGATGCAATTGCCAATGTCCTGGATTATGCAACAAATTATATGGTAGAAGCTGATTTTTACTGA 417 0.3765 MFVPKVNEKLLEDLEVMGFPKARATRALHCSGNTSLEDAINWIVDHENDIDIDEMPLVDVDIEVESTESFPISEEIRIKAQSLREQERKRIEQEEKRLEREREKWKEIANKKNICKSNDAIANVLDYATNYMVEADFY 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01334 138 Gene3D - 7 53 - -
Vimu9g01334 138 SUPERFAMILY UBA-like 5 57 IPR009060 GO:0005515
Vimu9g01334 138 CDD UBA_PUB_plant 6 53 - -
Vimu9g01334 138 Pfam UBA/TS-N domain 7 43 IPR015940 -
Vimu9g01334 138 Coils Coil 77 111 - -
Vimu9g01334 138 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Vimu9g01334 138 PANTHER F13M7.16 PROTEIN 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01334 Vimu-Chr9 21622189 21628393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01334 1 83 C2H2 Transcription Factor Family AT1G04850 57.831 6.56e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01334 - - vum:124828089 175.637