Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu9g01326 | ATGGAAGGTCGCCGGAGGATAACGCTTTACGAACAAATGACAACTAGCAACGGCAATACCAACAGCGGCAGTAGCAGCCGAGACTCACTAGCGAGCCTCATGCTCGAAGACGTCGTATTCAAGAAGGCCGAAGCCGACGCCGAAGCGAGCCGTGACCTGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAGCCTAACGGAGACGCGAAGGATCGCAACTCCTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCTATCGGCTTGGCTTGGTCCTCCGCAACTACTCACAGTAATAACAGCAATAATAACGACAATGAAGACGGACGTTTACCTCAAACTCGCCTCCTCTCGGACGACGTGGCGACTCAGCAGAACGACGTCGTTGTGGAGGACGCAAACGATTCAGATCCTATCGCGCGGTTCGGGTCTCCGACGGACAACACGGCGGCCGGCGGCGATTCCTCCGACGGGGAGAACAACCAGGAGGCTGCGGTTGGCGTGTCGCTGATGGATTTGTTGGAGGAAGCAGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGATGATGTGGTGGCAGATTTTGAGAAGAGAGATGAAGATGAAGCGGAAGATGAAGAAAAAGAAGGTTTGGTGGAGTATAACTGCTGCGTCTGCATGGTGCGCCATAAAGGCGCGGCGTTTATCCCGTGCGGACACACCTTCTGCAGAATGTGTTGCAGAGAGATTTGGGCTAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA | 807 | 0.5291 | MEGRRRITLYEQMTTSNGNTNSGSSSRDSLASLMLEDVVFKKAEADAEASRDLSRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAIGLAWSSATTHSNNSNNNDNEDGRLPQTRLLSDDVATQQNDVVVEDANDSDPIARFGSPTDNTAAGGDSSDGENNQEAAVGVSLMDLLEEAEQEMDLYRVSDDDVVADFEKRDEDEAEDEEKEGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCCREIWASRGNCPLCNNLILEILDIF | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu9g01326 | 268 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
| Vimu9g01326 | 268 | MobiDBLite | consensus disorder prediction | 134 | 165 | - | - | |
| Vimu9g01326 | 268 | CDD | RING-HC | 220 | 257 | - | - | |
| Vimu9g01326 | 268 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 258 | IPR001841 | - | |
| Vimu9g01326 | 268 | Pfam | Zinc finger, C3HC4 type (RING finger) | 218 | 261 | - | - | |
| Vimu9g01326 | 268 | PANTHER | OS01G0917900 PROTEIN | 6 | 268 | - | - | |
| Vimu9g01326 | 268 | SMART | ring_2 | 220 | 257 | IPR001841 | - | |
| Vimu9g01326 | 268 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Vimu9g01326 | 268 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 174 | 265 | IPR013083 | - | |
| Vimu9g01326 | 268 | SUPERFAMILY | RING/U-box | 219 | 264 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu9g01326 | Vimu-Chr9 | 21537122 | 21540676 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu9g01326 | 4 | 268 | C3H Transcription Factor Family | AT4G13100 | 36.667 | 1.70e-40 | 139 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu9g01326 | - | - | gmx:100819018 | 348.591 |