Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01320 ATGGCCACCCCAAACGACGCCGCTTCTCCCACCAAGAGGCCTCAACCCATCCCCTGGACCCACCAAGAAACTGTCCACCTCATCCGCGCCTACCAGGAGAAGTGGTACGCGCTCAAGCGCGGCCCGCTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCATCGTCGCCGCCCGCTGCGGCTACGACCTCGCGTATCCCGCCAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCCGAAAAGAAACACGTCGCCGCCACGCTCCGTCCCGCCGCCTGGCAGTACAACGCTCTCATGGAGGACCTCGAATGCGGCCCCCTCCCCATCTCCGCCCTCGTCCCGTTCCGAAACGACACCGATTCAGATCCCGACGACGACGGCACTTATCGGAACGGCAATGATGGCGATGAGAGCTTTGTGAAGTCGAAGAGTATTAACTGTATTCTCGGCGAGAGGCCCGTGAGAATGAGAAGCGGTGAAAGAGGGTTTTTGAGGGAGCGTTCTGAAGAAGAACGAGACGAGGTCGACGATCGCGACGACGACGTTTTGGCGTTGCCGGCGGAGATGAGGGCTTTCGCTGATAGGTTTATTGGAATGGAGAGTTTGAAGATGGAGATGATGAAGGAAACTGAAAGGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTGTTGACTCGCAGCGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCTAACAAGAAGGTCAAGATTACTCAACAAATCTGA 780 0.5821 MATPNDAASPTKRPQPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVIVAARCGYDLAYPAKSALQCRHKMEKLRQRHRAEKKHVAATLRPAAWQYNALMEDLECGPLPISALVPFRNDTDSDPDDDGTYRNGNDGDESFVKSKSINCILGERPVRMRSGERGFLRERSEEERDEVDDRDDDVLALPAEMRAFADRFIGMESLKMEMMKETERCRLEMEKKRIQMIVDSQRRIVDSIGRAFGSNKKVKITQQI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01320 259 FunFam Trihelix transcription factor ASIL2 19 86 - -
Vimu9g01320 259 Pfam Myb/SANT-like DNA-binding domain 18 108 IPR044822 -
Vimu9g01320 259 Gene3D - 19 86 - -
Vimu9g01320 259 ProSiteProfiles Myb-like domain profile. 18 81 IPR001005 -
Vimu9g01320 259 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 243 IPR044823 -
Vimu9g01320 259 MobiDBLite consensus disorder prediction 122 144 - -
Vimu9g01320 259 MobiDBLite consensus disorder prediction 125 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01320 Vimu-Chr9 21364382 21369853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01320 19 102 Trihelix Transcription Factor Family AT3G14180 29.762 1.61e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu9g01320 Myb_DNA-bind_4 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01320 - - gmx:100810821 389.423