Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01296 ATGGCTCCACGGTGGTTGCTAAAATGTTTCAGGTTAGGGTTGAGACCTCTTACTCAAAGCATTCCAAGTTGTTCTGAAGACTGGATGGGCTTCCTGATGATCCTCCTTTATCAAAATTGTGTTGCTCGCTCCCTCTTCTCTTTGTCCAAGCTGCGTGGGAGGGTACCTGCTAAAAGCACTCCGATGTTCAAGTCAAGGTTCATTTTCTTGATGGCTCCTGCCGCGTACTTCAACTGGGACACTCTTCAAATTCCAACCTCAGAAACAACATTCCATGAGAAGAACCTGTCTTTTGAGAACTACATTGACCCTCCTCTCTATGATCCTTCCATTTTCATTGCTCATTCTAACATCTTTCCAACTTCTCAAGAAGATACTCTACTCCTATCTCCCCAACGCCAAAAGTATTGCTGTGAGAGTGAAGTGCAAAAACTTACTGCACAAACTGCCCTGCCATTCAGTTTATACACAGACCAATCTGTTGTGCCTTATGATAATTTCTACTCTTCACACATTAAGAAACTGCCACAGCAAATATCAGGTGAGTTTGCACAACTTGATAGTACCTGTGAGTGTGTGAAAAAAGGAAAGGAGAGAACAATATCTCCCCAAAGCTTAGCAGCACGAGAGAGGAGAAGAAAGATCAGTGAAAAGACGCAGCAACTTGGAAAGTTGGTTCCTGGTAGACCAAATATGAACACAACTGAGATGCTTCATGCAGCTGCAAAGTATGTTAAGTATCTTCAAGCCCAAGTTAAGATGCTTGACCTCACAAAGTTACTTCAGTGGAGAGAAATGGAGGAGAGAAAAAGCATTTTGTATGCCACCGCCGAGGAGTCAGGAGGACCATCTTATGCAGTAGAGCTGGGAAGGCTAGATAGGAGAGTTTCAGCAAAAGGAAGTGTTAGACACCATATACCTCATCCTGATTTCTAA 936 0.4327 MAPRWLLKCFRLGLRPLTQSIPSCSEDWMGFLMILLYQNCVARSLFSLSKLRGRVPAKSTPMFKSRFIFLMAPAAYFNWDTLQIPTSETTFHEKNLSFENYIDPPLYDPSIFIAHSNIFPTSQEDTLLLSPQRQKYCCESEVQKLTAQTALPFSLYTDQSVVPYDNFYSSHIKKLPQQISGEFAQLDSTCECVKKGKERTISPQSLAARERRRKISEKTQQLGKLVPGRPNMNTTEMLHAAAKYVKYLQAQVKMLDLTKLLQWREMEERKSILYATAEESGGPSYAVELGRLDRRVSAKGSVRHHIPHPDF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01296 311 SMART finulus 205 254 IPR011598 GO:0046983
Vimu9g01296 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vimu9g01296 311 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 141 256 IPR045843 GO:0003700|GO:0006355
Vimu9g01296 311 Pfam Helix-loop-helix DNA-binding domain 209 249 IPR011598 GO:0046983
Vimu9g01296 311 Gene3D - 196 272 IPR036638 GO:0046983
Vimu9g01296 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 260 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01296 Vimu-Chr9 21085007 21087752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01296 197 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 63.934 6.94e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01296 HLH 0.0001 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01296 - - vum:124847968 251.906