Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01293 ATGGGACGCCGGAAAACGATGACGATGGACTGGGACGGCCTTGGCGATGTTGACGACGATGATGCCTTCTTCGAGTCATACAGCCGCCTTTCCACCGCCGCCTCCCTCGACCTGGCCTCCTCCTCGGACGATGACGACGACGATTTCGAAGACCCCCGCCTTTCCTTCGCCTCAGCCATCTCCTCCGCTCCCTCGCGTCGAAACAGCCTTTCCCCCACGATGGATGCTGCTCCAGATTACGGCGTATGGATGGCGGCCCCCCTCTCAATTGACGAGCGCCGAAAGCGTTTGCTTCGCGGCATGGGTCTGGACGACGACAAAGAGTTCTCGAAAACCACGCCCGTGGAACTCGGTCAATCAGTTTCAAAGCCCACCAACTCCATTTCCTCCGAAAAATCAACACTTCCGTCTACTTTCGCTAATCCCGTTACCGATACACCTATCGTGTCAACGACGCCGGTTACCGATTCAACGACGCCGGTTTCTGAGACAACGACAGCGGTTGCCGTTTCGACAGAGAAGATGTTTTCAGAGAACTCCTCTCATCAATTAGTTCTTGTTCGTTCGCGATCCGAGGGAGACATCGAGTTGTTCTCGTTGGAGAGGTCGAGAAGAGAACATTTCATCGAAAAGTGTTCGAAGCAGAGGTTGACGAGAACCGCGACGGAGGTGTTCGTCAACCGCGCTCCGCCGGGAACGAGAAACAGAGCGGTGTTGAGGGATTCCGAAGAAGCAGCGCAGTCCAAGCCGAAAAGCGCGAAGAATGAGGATTTGGGAGTGCGAGCGTTTTTCCTTATAAAGAACTTGGACACGGGGAAGGAGTTTATTGTGAACGAATTCACCGAAAACGGTGCGTGGAACAGGCTGAGTGATTTACAGACGGGGAGGCAGTTAACGATGGATGAGTTTGAAAAGACGGTGGGGAAATCGCGCGTGGTTAGCGAGCTTATGCGACGCAGTACGAGGAGCGAGAATTTGTCGCGGAAGCTGACTTCGAGTTCGTATATTTCGAGAAGTTTGAGGATGAGCAAGAGAAGAGGGGTTGCATTTCTGAAGAACATAAAGGGCGTGGCCAGTGGGTTCATTGGGGAGAGAGAGGGTTTTGGTAACGCAGCCGCCGCAACGGCTGCGGCGGAGAAGAGTCAGTGGGTGCGAGTGCGGCAGAGCGGGAAGTCGCACAAGGAGGTGTCGGCGTTGCATCTGTGTCAGGAGCTTCAGGGGCACGAGGGGTCGATTTGGACGATTAGGTTTAGTTTGGATGGGAGGTTTCTGGCGAGTGCAGGTGAGGACAAGGTGATACGAGTGTGGGAAGTGCAGGAGTGTGAGGTTATGTCGTTGAGGTTCGACGAGGGGAGTTTCACACCTATTCACCCTTCCTTCCTTGCCTCCAACGACGGTTCGCCTTTCTCTCCGGCGGCTGACAAGAAGAAGAAGGGCAAATTCGGAACGAAAAAGGGCCCCGCCATTCCTGACTATGTTCATGTTCCTGAAACTGTCTTCTCACTCTCCGACAAACCCTTCTGCACTTTCCAAGGACATTTGGATGATGTTTTAGATTTGTCATGGTCGAGATCTAAGCTACTTCTGTCATCTTCAATGGATAAAACGGTGAGATTATGGAACTTGGAGAGTAGGAGTTGCTTGTACAGGTTTCCCCACAGTGACTATGTAACCTGCATACAATTCAATCCTCTCAAAGATGATGTTTTCATCAGTGGTTCGCTGGACGCTAGGGTCAGAATATGGAGCATTCCTGAACGCCATGTTGTCGATTGGATTGATATCAATGAAATGGTTACTGCACTCTCCTTTACACCTGACGGTCAGGGTGCTATTGTTGGTACCCACAAGGGCGGTTGTCGTACATATAGCACAAAAGATTGCAAACTAACTCAAACAGGAACAATTGAGATTTCACAAAAGAAATCCCAACTAAGAAAAGTCACTGGTTTTCAGTTTGTTCCAGGCAAACCATCAGAAATTCTTGTAACTTCAGCGGATTCCAGAATAAGAATATTGGAAGGTTTTCGTAATGCAAACAGTCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATTATAAGTGCAAGTGAAGATTCTGAAGTATATGTGTGGAAGCATGAAGATCATAGAAGTGCAGGCAGTGGAAAATTCAAAAGTATGCTAGTTACTCGTGCTCACGAGCACTTCAACTGCAAAGATGTTTCAGTAGCAATACCATGGAATTGTACCGTCAAAGGTGAACCTCCGCTACTGCCAGTGCCTGTCAAAAAGCATTCAAAACGTTCTCTGGTAGGTTCTAATGGTGGGGAAGAAACACCATCGCCATCTTCTGCGAATGGTAGTAAGAAAACTCTTCCACCACTTCCAAGGAAAAGTAATAGCCTTAACTCAGAAGGAGCTTCAAATTCCCCTAGGGAAGAACTCACGGCAAATTTGCATGCAGAATCAGGACTTGGAGATTCATTTGGTAACAGTAAAAGAACGATACCTCAGTCTCCAATGAAAGATAATTGCCAAACCGCAGAGGAAGATGACCTTGAAGCATTTTCTCGCACAGATTCAGGATTTAGTGCTTCTTTTAGAACTGCATCATCATCATCCTCATCTAGGTATAGTGATGCACTTTCTTCAAGTGGATCATTTTCTTCATCTTTTTCATTATTGGACAGTGGCCACATTTCCTCCACAGTTGTTCCTACGGCATGGGGTTTGGTAATTGTGACAGCTGGGTTAGGAGGTGAGATCAGATGCTATCAAAATTTTGGGTTGCCAAGAAGGATTAGACAACCTCATCTTTTTGGAAGCTACAATAGTTTTACTAACACTTAG 2835 0.4815 MGRRKTMTMDWDGLGDVDDDDAFFESYSRLSTAASLDLASSSDDDDDDFEDPRLSFASAISSAPSRRNSLSPTMDAAPDYGVWMAAPLSIDERRKRLLRGMGLDDDKEFSKTTPVELGQSVSKPTNSISSEKSTLPSTFANPVTDTPIVSTTPVTDSTTPVSETTTAVAVSTEKMFSENSSHQLVLVRSRSEGDIELFSLERSRREHFIEKCSKQRLTRTATEVFVNRAPPGTRNRAVLRDSEEAAQSKPKSAKNEDLGVRAFFLIKNLDTGKEFIVNEFTENGAWNRLSDLQTGRQLTMDEFEKTVGKSRVVSELMRRSTRSENLSRKLTSSSYISRSLRMSKRRGVAFLKNIKGVASGFIGEREGFGNAAAATAAAEKSQWVRVRQSGKSHKEVSALHLCQELQGHEGSIWTIRFSLDGRFLASAGEDKVIRVWEVQECEVMSLRFDEGSFTPIHPSFLASNDGSPFSPAADKKKKGKFGTKKGPAIPDYVHVPETVFSLSDKPFCTFQGHLDDVLDLSWSRSKLLLSSSMDKTVRLWNLESRSCLYRFPHSDYVTCIQFNPLKDDVFISGSLDARVRIWSIPERHVVDWIDINEMVTALSFTPDGQGAIVGTHKGGCRTYSTKDCKLTQTGTIEISQKKSQLRKVTGFQFVPGKPSEILVTSADSRIRILEGFRNANSQIAASFSPDGRYIISASEDSEVYVWKHEDHRSAGSGKFKSMLVTRAHEHFNCKDVSVAIPWNCTVKGEPPLLPVPVKKHSKRSLVGSNGGEETPSPSSANGSKKTLPPLPRKSNSLNSEGASNSPREELTANLHAESGLGDSFGNSKRTIPQSPMKDNCQTAEEDDLEAFSRTDSGFSASFRTASSSSSSRYSDALSSSGSFSSSFSLLDSGHISSTVVPTAWGLVIVTAGLGGEIRCYQNFGLPRRIRQPHLFGSYNSFTNT 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 510 544 - -
Vimu9g01293 944 PANTHER WD REPEAT DOMAIN 44 18 926 IPR040324 -
Vimu9g01293 944 ProSitePatterns Trp-Asp (WD) repeats signature. 424 438 IPR019775 -
Vimu9g01293 944 MobiDBLite consensus disorder prediction 751 844 - -
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 550 IPR001680 GO:0005515
Vimu9g01293 944 MobiDBLite consensus disorder prediction 767 811 - -
Vimu9g01293 944 MobiDBLite consensus disorder prediction 113 161 - -
Vimu9g01293 944 Pfam WD domain, G-beta repeat 681 707 IPR001680 GO:0005515
Vimu9g01293 944 Pfam WD domain, G-beta repeat 546 583 IPR001680 GO:0005515
Vimu9g01293 944 Pfam WD domain, G-beta repeat 506 541 IPR001680 GO:0005515
Vimu9g01293 944 Pfam WD domain, G-beta repeat 403 436 IPR001680 GO:0005515
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 584 - -
Vimu9g01293 944 MobiDBLite consensus disorder prediction 823 839 - -
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 716 IPR001680 GO:0005515
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 584 IPR001680 GO:0005515
Vimu9g01293 944 MobiDBLite consensus disorder prediction 109 161 - -
Vimu9g01293 944 SMART WD40_4 544 583 IPR001680 GO:0005515
Vimu9g01293 944 SMART WD40_4 880 921 IPR001680 GO:0005515
Vimu9g01293 944 SMART WD40_4 503 541 IPR001680 GO:0005515
Vimu9g01293 944 SMART WD40_4 585 624 IPR001680 GO:0005515
Vimu9g01293 944 SMART WD40_4 398 437 IPR001680 GO:0005515
Vimu9g01293 944 SMART WD40_4 666 707 IPR001680 GO:0005515
Vimu9g01293 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 439 - -
Vimu9g01293 944 PRINTS G protein beta WD-40 repeat signature 570 584 IPR020472 -
Vimu9g01293 944 PRINTS G protein beta WD-40 repeat signature 528 542 IPR020472 -
Vimu9g01293 944 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Vimu9g01293 944 Gene3D - 372 467 IPR015943 GO:0005515
Vimu9g01293 944 Gene3D - 488 749 IPR015943 GO:0005515
Vimu9g01293 944 SUPERFAMILY WD40 repeat-like 399 710 IPR036322 GO:0005515
Vimu9g01293 944 ProSitePatterns Trp-Asp (WD) repeats signature. 528 542 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01293 Vimu-Chr9 21029402 21034550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01293 502 704 U-box Gene Family AT2G33340 26.126 3.24e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01293 K20241 - gmx:100779364 1138.25