Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01291 ATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACTAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGCGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGTACCGGCAGCAGTGGCGGCGGCTCCAACTCTCCGGCAACCTCTGACCGCCAGACAGGAAGTGTCAATTCTACCAACTCGGGATCTTCGAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCCTTCAGATTCATGCCTCCATTGCATCAACTTGGTGACTTTGGAGATGGAGACATAGGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTAGGAGACTATTATCAAATTGGAACAACTGCTTTATGTGGTGGTGCCACTTCAATCTTCTCTGCACCTGGTTTGGACCAATGGAGAATGCCACAGCAGTTTCCCCTCTTGGCCTCCATGGAAGGTTCATCACGAGCTTCTAATTTATACCCTTTTGAAGGTAGTGCTGAAGTCAGTGGATATATAAGGCCAAAGGTTTCAACTTCTGGGATCATGGCTCAGATAGCTTCAGTGAAAATGGAAGAACGTAAGGAACCTGATTTGTCAACACTTTTCTTGGGAAACGATAATCCAGTGAATGAACAATATTGGACCAGTGCTAGTTCTGCATCTTGGACAGATATTTCTGGGATTAGCTCCTCTTTCACTGCAAGCAACCGTCTATAG 828 0.4964 MADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGTGSSGGGSNSPATSDRQTGSVNSTNSGSSKSERIGLAPQIPPFRFMPPLHQLGDFGDGDIGLNYGLSYGPVGGVGDYYQIGTTALCGGATSIFSAPGLDQWRMPQQFPLLASMEGSSRASNLYPFEGSAEVSGYIRPKVSTSGIMAQIASVKMEERKEPDLSTLFLGNDNPVNEQYWTSASSASWTDISGISSSFTASNRL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01291 275 ProSiteProfiles Zinc finger Dof-type profile. 17 71 IPR003851 GO:0003677|GO:0006355
Vimu9g01291 275 Pfam Dof domain, zinc finger 16 71 IPR003851 GO:0003677|GO:0006355
Vimu9g01291 275 ProSitePatterns Zinc finger Dof-type signature. 19 55 IPR003851 GO:0003677|GO:0006355
Vimu9g01291 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 103 IPR045174 GO:0003700|GO:0006355
Vimu9g01291 275 MobiDBLite consensus disorder prediction 62 108 - -
Vimu9g01291 275 MobiDBLite consensus disorder prediction 71 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01291 Vimu-Chr9 20985191 20986313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01291 1 268 C2C2-Dof Transcription Factor Family AT3G55370 41.237 3.14e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu9g01291 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01291 - - rcu:8279572 295.819