Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01284 ATGGAACAGGGTCAATGTTGGACTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAACCAACCCTTCCTGTGGTGACTCATGGGAAGAACAGGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGTGTGTGGCCTCCAAGATCATACTCTTGTAGCTTCTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCAAGCCCCAACAATGAAATTCTATGTCATGACCTTCAAACTCAACTCCATATGCCAGTTCAAAGTCCTTTTGCTTCTTCTTTGGATGATTACCTATACCCGTCTCCTGTTTGTGGATTGCCTTATAAAAAAACTAAACCTAATTCTTATCATGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCGAAGGCCTTATTGGCTGCATCAGTTAATAGTGGTAACTCCAGAGATGAAACCATGATTCCATTTTATGATTCCAGTGTTCTCCACAAGATTTCTCCTATCAGTAACTCTTCCGAATCATGGCCAAGTTTATCTGAAGATCATAGATTATATTCATGTAAGTTCTATCCTCAAGCAGATACCAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGTAGGGGTAACAAGGGCGATACTGATGATATTGATGGGGATATGATCTTAAATTCAGTTGTGTGTAGCACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTACAAGAACAGGAAAACAGATGCTTCCTCATCACCATTTTCACCAAAGTCAAGCTCAGTTGACAGACATCATGTTCAGACAAAGATGCTTGAATTTAGCCCTAGCTCAGTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 939 0.4153 MEQGQCWTKRKYSLSSSLSSPTNPSCGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPNNEILCHDLQTQLHMPVQSPFASSLDDYLYPSPVCGLPYKKTKPNSYHDFVASPSSPSHSKALLAASVNSGNSRDETMIPFYDSSVLHKISPISNSSESWPSLSEDHRLYSCKFYPQADTKKPSKGIMDSRCRGNKGDTDDIDGDMILNSVVCSTHPSLQFESTKEADHISYKNRKTDASSSPFSPKSSSVDRHHVQTKMLEFSPSSVEELDLELRLGNRSKV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01284 312 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Vimu9g01284 312 MobiDBLite consensus disorder prediction 262 283 - -
Vimu9g01284 312 Gene3D Classic Zinc Finger 49 101 - -
Vimu9g01284 312 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Vimu9g01284 312 Pfam C2H2-type zinc finger 53 77 - -
Vimu9g01284 312 MobiDBLite consensus disorder prediction 265 280 - -
Vimu9g01284 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Vimu9g01284 312 PANTHER OS07G0101800 PROTEIN 26 309 - -
Vimu9g01284 312 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01284 Vimu-Chr9 20907783 20910427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01284 29 84 C2H2 Transcription Factor Family AT2G37740 82.143 5.68e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu9g01284 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01284 - - gmx:100801427 501.516