Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01257 ATGACTGAAGAGAAATCAGAGCAACTTTGTTTGAAGAATAAGCAAACCGATGCTGCTTCTAGTTCTTCTGTATCAGATGGAAATGGCAGTGCTATTCCCTCATCATCAAGGAAAACGGGATCAGCATTGCCGTGTAATAGGAGGACCACTGGTCCTGTTAGACGGGTAAAGGATGGTTGGACGGAAAAGGAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAAATCAGAAGTTCAATGTCTTCACAGATGGAAAAAAGTTCTTAATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGAGGATGATAAAATAATTGAACTGGTGTCTATACATGGACCTACAAAATGGTCTTTGATATCCCAATCATTGCCCGGTCGAATAGGAAAACAGTGCCGAGAACGATGGTGCAATCATCTTAGTCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAAAGCTCATTGTACACATGGCAACAAATGGGCTGAAATAGCCAAGGTTCTATGTGGAAGGACGGATAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAGGATTTCTATTTAGCTAATGGAAGACTTCCGCCCATTCCAAAGAGCAGTATGGAAGTTGCTGTCAAAGATACAGTTAAACATTCTACAACTAATACAGTTCATGTTTATTCGAATAAAGGATTTGATGCCACTGTTGCATCATCATCTAAAGCTACAGGCATTACTAAGCTTGATAACAGTGATAAGAATCAACTAGGATCCTCTGGAATAGTTGGAGAGGTTGGAGATTCTTCTAGGGTTCCACCAAAAAAAAGTGCTGATTCTGATTGTGTACACTGCAATAGATTATTCCACAAAGGTCTCCGCTGTAGTAACTTGGAATCAGGGTCGGGAGACAATTTTAAAATAAACAGGGGGCCAAAATTTGTGAATCCTGGACTCAATGCTAACCAGAGAATTGATCATTGTCTGAATTATAGTGATATGAACGGTGACAGATCATCTAGAATTTTTTATTCAAAGGAAAGTCGAACGTTTGGTTCTTTTTGTCATGAATCATCACGGCTTGATAATCCACATCCTTCAGAATCTCTTAATTTTAACATGTCTTCTGGCCTGCAGAATGAGTACATTTCTTCACCAATGAAGTCATCTGCTGGTTTCGTAACTCCACCTCATGTGAAGGGAATTGAATCATGCTCAGAATCTATTGAATCAATACTGAGAAAGGCAGCTAAAACATTCCCAACTCCTTCAATAATAAGGAAGAGAAGAAATGGAGGTGAATTACCTGCCACTCCCAGAAAGCTTGCAAATGCAGTTAATCCACATGTTTGTAATGAAGAAGTGAGAACAAATGATGTTTCTTGTTCTGGAGTTGTGGGGTTATCTGTCAGTCCAGCTAGCCATGGCCATGGGAGTAATATTCTTCAAAATAATGCTTTGAACATGACTCCTCCATACCGATTACGATCCAAGCAAACAGCTATTAAGTCTTTGACGAAACAACTTGATTCTGCATTTTACATGGAGAAAAGTGCTTCTGATATGGAAAAGTCTACTGAGAGAGTGTTGTGA 1647 0.3916 MTEEKSEQLCLKNKQTDAASSSSVSDGNGSAIPSSSRKTGSALPCNRRTTGPVRRVKDGWTEKEDETLKNAVEVFNGKNWKKIAEFFPDKSEVQCLHRWKKVLNPELVKGHWTKEEDDKIIELVSIHGPTKWSLISQSLPGRIGKQCRERWCNHLSPDIKKDPWTLEEELALMKAHCTHGNKWAEIAKVLCGRTDNAIKNHWNGSLKKKKDFYLANGRLPPIPKSSMEVAVKDTVKHSTTNTVHVYSNKGFDATVASSSKATGITKLDNSDKNQLGSSGIVGEVGDSSRVPPKKSADSDCVHCNRLFHKGLRCSNLESGSGDNFKINRGPKFVNPGLNANQRIDHCLNYSDMNGDRSSRIFYSKESRTFGSFCHESSRLDNPHPSESLNFNMSSGLQNEYISSPMKSSAGFVTPPHVKGIESCSESIESILRKAAKTFPTPSIIRKRRNGGELPATPRKLANAVNPHVCNEEVRTNDVSCSGVVGLSVSPASHGHGSNILQNNALNMTPPYRLRSKQTAIKSLTKQLDSAFYMEKSASDMEKSTERVL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01257 548 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Vimu9g01257 548 Gene3D - 108 161 - -
Vimu9g01257 548 Pfam Myb-like DNA-binding domain 112 170 - -
Vimu9g01257 548 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Vimu9g01257 548 PANTHER MYB PROTEIN-RELATED 40 103 - -
Vimu9g01257 548 FunFam Transcriptional activator Myb isoform A 109 161 - -
Vimu9g01257 548 MobiDBLite consensus disorder prediction 1 61 - -
Vimu9g01257 548 CDD SANT 60 103 IPR001005 -
Vimu9g01257 548 FunFam Transcriptional activator Myb isoform A 56 108 - -
Vimu9g01257 548 SMART sant 108 157 IPR001005 -
Vimu9g01257 548 SMART sant 160 208 IPR001005 -
Vimu9g01257 548 SMART sant 56 105 IPR001005 -
Vimu9g01257 548 MobiDBLite consensus disorder prediction 275 295 - -
Vimu9g01257 548 Pfam Myb-like DNA-binding domain 59 103 IPR001005 -
Vimu9g01257 548 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Vimu9g01257 548 CDD SANT 112 155 IPR001005 -
Vimu9g01257 548 MobiDBLite consensus disorder prediction 12 46 - -
Vimu9g01257 548 CDD SANT 163 203 IPR001005 -
Vimu9g01257 548 Gene3D - 162 231 - -
Vimu9g01257 548 Gene3D - 56 107 - -
Vimu9g01257 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 103 IPR017930 -
Vimu9g01257 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Vimu9g01257 548 SUPERFAMILY Homeodomain-like 55 110 IPR009057 -
Vimu9g01257 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Vimu9g01257 548 ProSiteProfiles Myb-like domain profile. 57 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01257 Vimu-Chr9 20480587 20485061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01257 3 548 MYB Transcription Factor Family AT3G09370 40.681 4.29e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g01257 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01257 K09422 - gmx:100777236 630.943