Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01220 ATGGAGGGAAAAGAAGAGGATGTGAGAGTTGGAGCAAACAGATATGGGGAGAGGCAACCGATAGGAACTTCTGCGCAGGTGCAAGATGCCAAAGACTACAGAGAGCCACCCTCTGCGCCTCTCTTTGAGCCTGGAGAGTTGTCATCGTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACCTTCTTGTTCCTTTACATTACAGTCTTAACTGTCATGGGTGTGCTCAAATCAGACTCTAAGTGCTCCACTGTAGGGATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATCTTTGCTCTTGTTTACTGCACTGCTGGTATCTCAGGGGGTCATATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAACTGTCTCTGACAAGAGCAATATTTTACATAATTATGCAGTGCCTGGGAGCTATCTGTGGGGCAGGTGTAGTTAAGGGCTTTCAGCCAAACCTGTACGAGAAACTTGGTGGTGGTGCCAATTCAGTCGGTACAGGGTATACCAGAAAGGCTGGTCTCGGAGCAGAGATTGTCGGTACATTTGTGCTTGTTTACACTGTCTTCTCTGCAACTGACGCAAAGAGAAATGCTAGAGACTCCCATGTTCCAATATTGGCACCATTGCCTATTGGTTTTGCTGTCTTTTTGGTGCACTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTTGGTGCAGCCCTTGTATACAACAAGGACTCAATTTGGGATGAACATTTTAAATTTTTCAAATTGTACCGTTGTGGTGCAGTGGATTTTTTGGGTTGGGCCTTTCATTGGAGCAGCACTTGCAGCTTTGTACCATCAGGTAGTGATCAGGGCCATCCCCTTCTCGTCCAAGTGATGCAAGCAATGCCTAAAAAATAA 921 0.4691 MEGKEEDVRVGANRYGERQPIGTSAQVQDAKDYREPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVLKSDSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQPNLYEKLGGGANSVGTGYTRKAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALVYNKDSIWDEHFKFFKLYRCGAVDFLGWAFHWSSTCSFVPSGSDQGHPLLVQVMQAMPKK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01220 306 NCBIfam MIP family channel protein 58 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 CDD MIP 54 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 Gene3D Glycerol uptake facilitator protein. 39 283 IPR023271 -
Vimu9g01220 306 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Vimu9g01220 306 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 Pfam Major intrinsic protein 46 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu9g01220 306 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 261 IPR034294 -
Vimu9g01220 306 SUPERFAMILY Aquaporin-like 47 248 IPR023271 -
Vimu9g01220 306 FunFam Probable aquaporin PIP1-2 39 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01220 Vimu-Chr9 20000165 20002437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01220 1 301 Major Intrinsic Protein MIP AT2G45960 76.412 4.61e-172 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01220 K09872 - gmx:100803259 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04431 6 49617984 49619332 Vimu9g01220 9 20000165 20002437 PCT