Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01215 ATGCCTTCCTCTTCCACCACCATAGTTTCTAGATGCCTCGTCCATCCCGACCACAAATCCACCATCAAACCACTCAAACTCTCTGTCTCTGACCTTCCAATGTTGTCGTGTCACTACATACAAAAGGGCGTCTTGCTCACTGCCCCAACCTCTTCCCAAGACCTCATTCTCTCTCTCAAACACTCTCTCTCCGCCGCTCTCTCCCACTTCCCTGCCCTCGCCGGCCGTCTTTCCACTGACTGCCAGGGTTACGTCCACATCGACTGCAACGACGCTGGCGTCGACTTCATCCATGCCAAGGCCAAGCACTTAACTCTAAACGCCGTCGTTTCACCCACGCTCGTTGATGTTCACCCTTGCTTCAAGGAGTTCTTCGCCTATGACATGATGATCTCCTACGCCGGTCACCACAATCCCCTCGCTGCCATCCAAGTCACCGAGCTCGCCGACGCCGTCTTCGTTGGCTGCACCGTCAACCACGCTGTCACCGACGGCACCTCCTTCTGGCATTTCTTCAACACCTTCGCCGCCATCAACAAAGGCGGCGCCGCCAAGAAAGTACTCCGCGCGCCGGACTTCACGCGCGAAACCGTAATTAATTCCGACGCTGTCCTCTTTGTGCCTGCCGGCGGCCCAGCCCTCACCTTTGACGCCAAGGCACCCATTCGCGAACGCATCTTCCATTTCTCCAGAGAATCCATTCAGAAACTCAAACTTAGAGCCAACGCCAAATCCAACGAACTAACGGAAGTAATGGAAAAACAAGTGAATGACGGTTGGAACATCGTTAACGGTAAAGTTATCGGAAAGGATAACGGTAACGGAAGAAACGAGATCTCGTCGTTCCAGTCGTTATCTGCTCAGCTCTGGCGTGCGGTGACACGTGCGAGGAAATTCAACGACCCTGCCAAAACGTCGACGTTTCGGATGGCGGTTAATTTCCGCCATCGCTTGGAGCCGAAGATGGACCCGTTTTACTTCGGTAATGCGATTCAGAGCATTCCAACCGTCGCAACCGTTAGGGATATCCTCTCACACGATCTGCGTTTCTGCGCGGAGTTGCTGCACCGAAACGTTATCGCCCACGATGACGCCACGGTGCGACGTGGCATAGAGGATTGGGAGAACGCGCCGAGGCTGTTTCCTCTTGGGAACTTCGACGGCGCGATGATCACCATGGGAAGCTCTCCGCGTTTTCCCATGTACGACAACGACTTCGGCTGGGGAAGGCCTGTCGCGATTCGGAGTGGCAAAGCGAACAAATTCGACGGGAAAATCTCCGCGTTTCCAGGGAGAGAAGGAAACGGCAGCGTGGATCTGGAAGTCGTTTTGGCTCCGGAGACCATGGCGGGGCTAGAAAACGACATGGAGTTTATGCAATACGTAACGCAGGTGGTGTGA 1401 0.546 MPSSSTTIVSRCLVHPDHKSTIKPLKLSVSDLPMLSCHYIQKGVLLTAPTSSQDLILSLKHSLSAALSHFPALAGRLSTDCQGYVHIDCNDAGVDFIHAKAKHLTLNAVVSPTLVDVHPCFKEFFAYDMMISYAGHHNPLAAIQVTELADAVFVGCTVNHAVTDGTSFWHFFNTFAAINKGGAAKKVLRAPDFTRETVINSDAVLFVPAGGPALTFDAKAPIRERIFHFSRESIQKLKLRANAKSNELTEVMEKQVNDGWNIVNGKVIGKDNGNGRNEISSFQSLSAQLWRAVTRARKFNDPAKTSTFRMAVNFRHRLEPKMDPFYFGNAIQSIPTVATVRDILSHDLRFCAELLHRNVIAHDDATVRRGIEDWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPVAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTQVV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01215 466 Gene3D - 221 459 IPR023213 -
Vimu9g01215 466 Pfam Transferase family 7 459 - -
Vimu9g01215 466 Gene3D - 6 205 IPR023213 -
Vimu9g01215 466 Coils Coil 234 254 - -
Vimu9g01215 466 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01215 Vimu-Chr9 19941019 19944306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01215 8 454 Monolignol Biosynthesis Gene Families AT5G48930 26.840 8.18e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01215 - - var:108346317 900.582