Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01193 ATGGTGTATGAACTAATTTTGCAGAAGGAGTCGTGGAGTCTAGAGGAAGACATGATTCTGATAAAAGGGCACCAGGAATTTGGCAACAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATAGTATTAAGAATCATTGGAATGGAACAAAGAGACGGCAGAGTTGCAGGACCTACAACGGGAATAAGAAAAACTCTTACGAAGGATCAATGCTTCGTGCTTACGTTAAAAGGGTCACTGCTACGGAAGAATCTACAAAAGTCTTCAAGAAACCCACAACCAAAAAGAATAAGAATGGGATACCCACTTTGTTGAGCTTTGATCCATGTACAAACGAAATGTTTCTCAGAAACTACGCGCCATTGCAAGTTAAAAGTAATAATGTTGGGGTTTCCTATGGTGCAGTTGGAAAGAATGCTATCAACAGATAA 441 0.4059 MVYELILQKESWSLEEDMILIKGHQEFGNRWSEIAKRLPGRTENSIKNHWNGTKRRQSCRTYNGNKKNSYEGSMLRAYVKRVTATEESTKVFKKPTTKKNKNGIPTLLSFDPCTNEMFLRNYAPLQVKSNNVGVSYGAVGKNAINR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01193 146 Gene3D - 11 81 - -
Vimu9g01193 146 ProSiteProfiles Myb-like domain profile. 7 54 IPR001005 -
Vimu9g01193 146 PANTHER MYB PROTEIN-RELATED 8 86 - -
Vimu9g01193 146 CDD SANT 11 51 IPR001005 -
Vimu9g01193 146 Pfam Myb-like DNA-binding domain 9 51 IPR001005 -
Vimu9g01193 146 SMART sant 8 56 IPR001005 -
Vimu9g01193 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 58 IPR017930 -
Vimu9g01193 146 SUPERFAMILY Homeodomain-like 7 57 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01193 Vimu-Chr9 19653984 19654424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01193 7 82 MYB Transcription Factor Family AT4G18770 55.000 2.69e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu9g01193 Myb_DNA-binding 6.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01193 - K09422 vra:106773360 222.246