Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01180 ATGGAACCAGAAGAAACCGCCGCCACCGCAGTAGATGGGAGTGGTGACGAGGGACTGCTGTTGTTAGAAGGCAGTGATGTCGGCGGTGGCAAGGACAGAGTGAAGGGCCCTTGGTCGCCGGAAGAGGACGCCATTCTGAGTCGTCTCGTGAGCAAGTTCGGCGCCAGAAACTGGAGTCTCATCGCACGGGGAATCAGTGGAAGATCCGGCAAGTCATGCCGTCTCCGGTGGTGCAACCAGCTTGACCCCTCCGTTAAGCGCAAACCCTTCACCGGTAGAAACGACCTCTTTAGAACCTTTGAGCTGTCACCTGTATCAAATTTATCTACATCAGATCTTATGTCTTCTTTCTCAAGAACTCAAGCAAGTGCCCTGCTAAACCTGCATGTTCTTGAATATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATCCATGGCAACAAATGGGCAGCCATTGCCAGGCTTCTGCCCGGAAGAACGGATAATGCCATTAAGAACCACTGGAATTCCACTCTAAGGCGTCGCGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGCCAGCTTGGAGAAAGCAAAAGCATCCTCGGAAGACACCCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTGTAGATATCATGGATGATAAATCTGATGGTAAAGCACAAGCTGAGGGCCAATTACACCACAAAGTCAAGGATCCACCAACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAACGTTTATCACTCAAATGATGTTATACAGCCTTCAACATCAATTCAAAGACCTGTCCCGAAGCAAGGTCCCATTTTACAATCGTCAAGACCAGATATGGAATTTTGTAGAATGGTTGAAGGAATTTGTGGTGATCAGGCAGTACCTCACCAGTGTGGCCATGGTTGCTGTGCTTCTCCAAATGGTAGAAAGTCCGAAAGCTCGTTGTTGGGACCGGAATTCATCGAATTCTCTGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATTGCTGCAGACATCAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTGAAAATGATGGGAAACACGTCTGGCAGTGCAATGTCAAATGGATCTCGAATACATATTGGCCATTAG 1182 0.4712 MEPEETAATAVDGSGDEGLLLLEGSDVGGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTGRNDLFRTFELSPVSNLSTSDLMSSFSRTQASALLNLHVLEYEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDASLEKAKASSEDTLSCGDVSLKSSEGRDVSSVDIMDDKSDGKAQAEGQLHHKVKDPPTLFRPVARVSAFNVYHSNDVIQPSTSIQRPVPKQGPILQSSRPDMEFCRMVEGICGDQAVPHQCGHGCCASPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKMMGNTSGSAMSNGSRIHIGH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01180 393 PANTHER MYB PROTEIN-RELATED 35 229 - -
Vimu9g01180 393 Pfam Myb-like DNA-binding domain 134 172 IPR001005 -
Vimu9g01180 393 Pfam Myb-like DNA-binding domain 35 81 IPR001005 -
Vimu9g01180 393 Gene3D - 34 86 - -
Vimu9g01180 393 FunFam MYB transcription factor 35 86 - -
Vimu9g01180 393 ProSiteProfiles Myb-like domain profile. 134 173 IPR001005 -
Vimu9g01180 393 SUPERFAMILY Homeodomain-like 35 174 IPR009057 -
Vimu9g01180 393 CDD SANT 37 79 IPR001005 -
Vimu9g01180 393 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Vimu9g01180 393 MobiDBLite consensus disorder prediction 208 227 - -
Vimu9g01180 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Vimu9g01180 393 SMART sant 127 175 IPR001005 -
Vimu9g01180 393 SMART sant 34 83 IPR001005 -
Vimu9g01180 393 Gene3D - 132 176 - -
Vimu9g01180 393 CDD SANT 134 173 IPR001005 -
Vimu9g01180 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 177 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01180 Vimu-Chr9 19491003 19496322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01180 24 393 MYB Transcription Factor Family AT3G09230 44.882 2.01e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g01180 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01180 K09422 - gmx:100813406 588.956