Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01157 ATGGGTGCTTGTTGGAGCAGTGGGACGAAGGCTGTGAGCCCTTCCAGTGCAGGTACTGTGGTGACTGAATTTTTGATCATTTGTTTTGGTACGTTTACAGGGTTCACTTCTAGAAGTGTGAGCAGAGAGGGCTATGACATCCATTCAAGTAGCAGGAACTCATCAGCCTCCATACCCATGACCCCTCGGAGTGAGGGTGAGATCTTACAATCTTCAAATTTGAAAAGCTACAGCTACAATGACCTAAGAATAGCAACAAAACATTTCAGCCCAGACAATGTCTTAGGGGAAGGTGGATTTGGTTCAGTTTTTAAGGGTTGGATTGATGAACATTCGCTTTCTGTTACCAAGCCTGGTATAGGTATGGTTGTTGCTGTGAAGAAACTTAACCAAGAGGGATTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGGATCAGCACAGGCTTCTAGTTTATGAATACATGCCAAAGGGCAGTGTGGAGAATCATCTATTCAGGAGGGGGTCTCATTTTCAACAGCTTTCTTGGACATTAAGATTGAAAATATCCCTTGGGGCTGCTAGGGGTCTTGCTTTTCTCCATAACTCAGAAACTAAAGTCATATACAGAGACTTTAAGACTTCTAATATCCTGCTTGATACGAACTATAATGCCAGACTTTCTGATTTTGGGCTAGCCAGAGATGGACCCACTGGTGATAAGAGCCATGTTTCTACAAGGGTCATGGGAACACATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTGACTGCCAAGAGTGATGTGTATAGTTTTGGAGTAGTTCTTTTGGAAATGTTATCAGGAAGACGTGCCATAGACAAGAATCGGCCATCTGGGGAACAGTGCTTAGTTGAATGGGCAAAACCTTACCTTGCTAACAAAAGAAGGGTTTTTCGTGTAATGGATAGTCGTCTAGAAGGTCAGTATTCCCTTAACCAAGCTCAAAGAGCAGCCACTCTTGCTTTTCAGTGTCTTTCTGTAGAGCCCAAATACAGGCCAAACATGGATGAGGTGGTGAGAGTATTGGGGCAACTACGTGAGTCAAATGATCAACTGAAAAATGCTGATCATAATAAAAAACGTCGACTAAGTGACTCTGCCTCTGGCCATGGCCACCCCAATGGACTCCCTTCATCTGCTAGCACAGGAAGTTCTGATGCTCCAAAAAAGTTTGCTTATCCAAGGCCTTCTGCTTCTTTTCTTTATGCTTAG 1299 0.4396 MGACWSSGTKAVSPSSAGTVVTEFLIICFGTFTGFTSRSVSREGYDIHSSSRNSSASIPMTPRSEGEILQSSNLKSYSYNDLRIATKHFSPDNVLGEGGFGSVFKGWIDEHSLSVTKPGIGMVVAVKKLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFQQLSWTLRLKISLGAARGLAFLHNSETKVIYRDFKTSNILLDTNYNARLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLANKRRVFRVMDSRLEGQYSLNQAQRAATLAFQCLSVEPKYRPNMDEVVRVLGQLRESNDQLKNADHNKKRRLSDSASGHGHPNGLPSSASTGSSDAPKKFAYPRPSASFLYA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01157 432 Pfam Protein kinase domain 92 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01157 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vimu9g01157 432 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01157 432 MobiDBLite consensus disorder prediction 400 415 - -
Vimu9g01157 432 MobiDBLite consensus disorder prediction 379 396 - -
Vimu9g01157 432 Coils Coil 364 384 - -
Vimu9g01157 432 Gene3D Transferase(Phosphotransferase) domain 1 175 399 - -
Vimu9g01157 432 PANTHER OS01G0588500 PROTEIN-RELATED 53 374 - -
Vimu9g01157 432 FunFam Serine/threonine-protein kinase BIK1 56 174 - -
Vimu9g01157 432 FunFam Probable serine/threonine-protein kinase PBL8 175 391 - -
Vimu9g01157 432 Gene3D Phosphorylase Kinase; domain 1 64 174 - -
Vimu9g01157 432 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524
Vimu9g01157 432 CDD STKc_IRAK 95 374 - -
Vimu9g01157 432 MobiDBLite consensus disorder prediction 378 432 - -
Vimu9g01157 432 SUPERFAMILY Protein kinase-like (PK-like) 55 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01157 Vimu-Chr9 19155316 19158064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01157 28 379 Glycoside Hydrolase AT3G07070 43.750 1.74e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu9g01157 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01157 - - gmx:100795058 729.169