Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01151 CGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAATAAATGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAGAAACAAGAGATTAACCAAGCAATTGGCCCAGTTGACAATACCAAATATGATCATATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAAGAACACCCTTCACAATCATCATACCTTATGGCTGCTTCTACTGGACCCTTTATCCACACTGATGCACCTGCAACTGCTTCTGCATCTGCATCAGCAGCAGCATTCCTTCCTCTTTGGCTTTCAAATTCTAGCACCACCAATCCCTCACAAGCAATTAGGCCACCTTCCCCTTCTGTTACCCTTAGTCTCTCCCCCTCAATAGCACCTCCTCCCCCTTGGTTGAATGCAACAACACCTCATGGTGATAACATAGTAGTGTTAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGACATCATGCTATGGTGACGCATAGGAAGGAGGCGGCGTGGCTGTTGAGAAGGGTGGAGCAGCAGTTGGAGGAAGAGAAGGCAGGCAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTAGGGGAAGAACAGGATGCTGCTTTGGACAGGATAGAAACAGAATATAAAGAACAGTTAGCAGGATTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGGAATGGAATGCAAAGCACATGAGGGTAGTGAAGTGTATGGAACGACAAGTA 801 0.4619 RLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINQAIGPVDNTKYDHILETFAEKLVKEHPSQSSYLMAASTGPFIHTDAPATASASASAAAFLPLWLSNSSTTNPSQAIRPPSPSVTLSLSPSIAPPPPWLNATTPHGDNIVVLELIECCKELEEGHHAMVTHRKEAAWLLRRVEQQLEEEKAGRRREKMEEIEAKIKALGEEQDAALDRIETEYKEQLAGLRRDAESKEQKLVEEWNAKHMRVVKCMERQV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01151 267 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 265 - -
Vimu9g01151 267 CDD SANT 1 37 IPR001005 -
Vimu9g01151 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Vimu9g01151 267 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Vimu9g01151 267 Coils Coil 186 225 - -
Vimu9g01151 267 Gene3D - 1 58 - -
Vimu9g01151 267 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01151 Vimu-Chr9 19085108 19085910 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01151 1 267 MYB Transcription Factor Family AT2G37630 51.495 2.85e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu9g01151 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01151 K09422 - gmx:732551 311.227