Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01149 ATGAAAGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTTTCTCAACGCATGAACACCCCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGATCTCTCACCGAAGAGGAGCAGCGCCTTGTAATCCGGCTTCAAGCAAAATATGGCAACAAATGGAAGAAAATTGCAGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGAGAGAAGAAGGACCTCAATAGAATCCCTGACCCCAGTAACAATAGCAAGTACGAGCATATACTTGAGAGTTTTGCAGAAAAACTAGTCAAGGAACAGCATCCTTCACCTTCATTTGTTATGACTGCTTCTGATGGGACATTTCTGCGTACTGATACACCAGCACCTGCATCAACCTTGCTTCCTTCTTGGCTTTCCAATTCAAGTAGTGCTGCTGCTGCTGCTGGTCCAAGTTCCCTTTCTGTGACACTCAGTCTTTCTTCTGCAACAGTGACTGCAGCTCCATTCTCATGGTTGCAACCTGATAGGGGACCAGACATTGGTCCTTTTGCTTTGGGGAATACACCAGCTTTCAGTGAAAATATGCTGATATCTCAGATGTTGGAGCAGTGCAAAGAGCTGGAAGAAGGGCACCGAGCTTTGAGTGCTCACAAGAAAGAGGCAGTTTGGAGGTTAAGCCGAGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGCCGAAGACGGGAGAAGATGGAAGAGTTTGAAGCAAAGATTAAGGCTCTTCAAGAAGAGGAGAGAACTGCTTTGAGCAGAATTGAAGCAGAGTACAGAGAGGAGTTAGCTGCATTGAAGAGAGATGCTGAAAACAAGGAACAAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCAGCTTACTAGGTTGCTAGAGCAGATAGGATGCAGAGCAGGGCTCCTCGAGCCAAATACAAGATGA 1059 0.4618 MKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKDLNRIPDPSNNSKYEHILESFAEKLVKEQHPSPSFVMTASDGTFLRTDTPAPASTLLPSWLSNSSSAAAAAGPSSLSVTLSLSSATVTAAPFSWLQPDRGPDIGPFALGNTPAFSENMLISQMLEQCKELEEGHRALSAHKKEAVWRLSRVELQLESEKASRRREKMEEFEAKIKALQEEERTALSRIEAEYREELAALKRDAENKEQKLAEQWAAKHLQLTRLLEQIGCRAGLLEPNTR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01149 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vimu9g01149 352 Coils Coil 272 325 - -
Vimu9g01149 352 Pfam Myb-like DNA-binding domain 7 67 - -
Vimu9g01149 352 Gene3D - 4 58 - -
Vimu9g01149 352 FunFam MYB-related transcription factor 4 58 - -
Vimu9g01149 352 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vimu9g01149 352 CDD SANT 6 53 IPR001005 -
Vimu9g01149 352 Gene3D - 62 128 - -
Vimu9g01149 352 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vimu9g01149 352 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vimu9g01149 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vimu9g01149 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 345 - -
Vimu9g01149 352 SMART sant 3 55 IPR001005 -
Vimu9g01149 352 SMART sant 58 106 IPR001005 -
Vimu9g01149 352 CDD SANT 63 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01149 Vimu-Chr9 19063097 19064155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01149 1 343 MYB Transcription Factor Family AT2G37630 60.870 6.31e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g01149 Myb_DNA-bind_6 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01149 K09422 - gmx:100101908 567