Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01120 ATGCTGAGCAAATTTGAGATGTCAGACCTTGGAGAGTTGAACTATTTCTTGGGGATTCAGTTTTCAAAAACTCAATATGGAACTGTTATGCACCAGTTCAGGTGTTTGCAAGAACTGTTGATAAAATTTAACATGAGGAAGAGTAACCCTACATGTACACCAACTGAAGTGGATTTGAACTTCAATGTTGGCCTAATCAGCAAATACATGCAAGATCCTAAGCAGTCTCATATGCTAGCAGAGTATATCGTTGCCTCTGATGTAGCTTGCCATGCAGCATGGCTAGGCTATGTTATGAAGGAGTTGAAGTGGACAACAGATCAACAATTGATTTGGCCAGACATCGAGCTTCTCACGGAAAAAGTAAGCACATTGAAACTAGTTTTCACTTTTTGCTTTGCACATATCTTTACTAAAGCTTTGAAGCGAGAAAGGTATAGGTTCTTGAGAGAATCTATTGCTAATGCGATAAAATTACACATGGAGCATTGTAGGGAGGCACTTTTTGAGGCTGCTGGCATCTCAGGGGACGCAGTCTTGAATTCCTGCGAAGAAATGGAGATTACTAATGCGATAGAATTCCACATGAAACATTGGAGGGACGCATTTTCTAAGGATGCTGCGGTTAATTCTGAGATAATGTTGCTCAAGAATCATTGGGAGGAGAAAGTTCTTAAGGCTTATGGTAACGAACTATATTCCAGGAGAACAAGTGACATAGAACGCCACTTGGCGCATTGCGCTAGTACACTTATTGAGGCTACTGACATCTCAACAGCTTTTCAACCAAGTTTTCAAAAGCTGCAGGCTTACAATCGGATAGACAGCCTTGTAGAATGTTGGAGGATGGCACTCTGTGAGGCTGCTGAAATTTGGAGGTTGGTAGTCCAGCACTACAGAGGAATAACGGATAATGAGATCAACTACATCGAGAAGCGTGCTAGGGACGCACTTCGTGAGGCTGCTGGCATCTCCGGGGTTGTAATCCTCAATTCTAGGAATGAAAGTGAGGCTGTGAAAAATATTGTTAAAAGTGTTACAAGTTTGTTGGACAAGACAGAGTTGTTTGTTGCCAATAATCCTGTCGGGGTAGAATCTCGAGTGCAGGAAATGGTTCAATTGCTAGAAGAAAAACAATCAAACGATGTTCTACTACTTGGGATATGGGGGATGGGAGGCATTGGAAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGCCTGAATTTTGAGGGACGGAGTTTCCTTGCAGATATTAGGGAGGCTTGGGGGCAAGAAGCTGGCCACGTTTGTTTACAACAACAACTTCTATCTGATATCCACAAAGGAAACAATACAAAGATACATAACAGTGAATCTGGAAAATTTATATTAAGAGAAAGACTTCGCCGTAAAAGGATACTTGTTATACTTGATGATGTAAATGAATTACAACAATTAAATGCTTTGTGTGGAAATCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATTACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGATCAAGTGTTTGCAATGACAGGAATGAATGTAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTCAAACAAGCAAGTCCCAAAGAAGATTTTATTGATCTTTCAAGAAACGTAGTTGCTTATGCTGGGGGCTTGCCACTTGCTCTTGAAGTCCTTGGGTCTTATTTGTTTGGTATGGAGGTAACAGAATGGAAGAGTGTATTGGAAAAACTTAGGAAAATTCCTGATGAGAAAGTACAGGAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTCCTTGACATAGCATGTTTCTTTATAGGAAAGGATCGAAATGATGTTATACATATATTGAATGGTTGTGGACATTTCGCAGAAAATGGAATACGTGTCTTGATAGATGATAAGAACCAACTTGGAATGCATGATTTGCTACGGGACATGGGAAGGGAAATTATTCGTTCAAAATCACCAATGGAGCTTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTGTTATCAAAAGAAACTGGGACAAAATTTATTGAGGGATTGACTTTGAAGTTACCTAGAACTAATACAAAATCTCTATTCCCTAAAGCATTTATGAACATGAAGAAACTCAGGTTGCTGCAACTTTCTGATGTAGAACTTGTTGGAGATTTTGAATATCTTTCCAAAGACCTCAGATGGCTTTGTTGGCATGGATTTCCTTTGGCCTTCATACCAACAAGCTTTTATCAAGGGAGTCTAGTTTCTATTGAGTTAGAAAGTAGTAAGATTACCATGGTGTGGAAAGCGACTCAGATTCCTAACAAAGTGGTTCAACTTGCCGGATTTGTTCGGAGGAGAGTGGGAATGATGGAGGGAAGAATGAACGTAGTTGAAGGGCGGAATCAGCGGCTAACAGGCAAGACACGATAA 2475 0.3976 MLSKFEMSDLGELNYFLGIQFSKTQYGTVMHQFRCLQELLIKFNMRKSNPTCTPTEVDLNFNVGLISKYMQDPKQSHMLAEYIVASDVACHAAWLGYVMKELKWTTDQQLIWPDIELLTEKVSTLKLVFTFCFAHIFTKALKRERYRFLRESIANAIKLHMEHCREALFEAAGISGDAVLNSCEEMEITNAIEFHMKHWRDAFSKDAAVNSEIMLLKNHWEEKVLKAYGNELYSRRTSDIERHLAHCASTLIEATDISTAFQPSFQKLQAYNRIDSLVECWRMALCEAAEIWRLVVQHYRGITDNEINYIEKRARDALREAAGISGVVILNSRNESEAVKNIVKSVTSLLDKTELFVANNPVGVESRVQEMVQLLEEKQSNDVLLLGIWGMGGIGKTTIAKAIYNKIGLNFEGRSFLADIREAWGQEAGHVCLQQQLLSDIHKGNNTKIHNSESGKFILRERLRRKRILVILDDVNELQQLNALCGNREWFGSGSRIIITTRDIHLLRGKRVDQVFAMTGMNVDESIELFSWHAFKQASPKEDFIDLSRNVVAYAGGLPLALEVLGSYLFGMEVTEWKSVLEKLRKIPDEKVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDRNDVIHILNGCGHFAENGIRVLIDDKNQLGMHDLLRDMGREIIRSKSPMELEERSRLWFHEDVLDVLSKETGTKFIEGLTLKLPRTNTKSLFPKAFMNMKKLRLLQLSDVELVGDFEYLSKDLRWLCWHGFPLAFIPTSFYQGSLVSIELESSKITMVWKATQIPNKVVQLAGFVRRRVGMMEGRMNVVEGRNQRLTGKTR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01120 824 Gene3D - 296 356 IPR035897 -
Vimu9g01120 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 615 IPR027417 -
Vimu9g01120 824 SUPERFAMILY "Winged helix" DNA-binding domain 591 690 IPR036390 -
Vimu9g01120 824 Gene3D Ribonuclease Inhibitor 675 797 IPR032675 -
Vimu9g01120 824 Gene3D - 521 604 IPR042197 -
Vimu9g01120 824 SMART AAA_5 382 522 IPR003593 GO:0016887
Vimu9g01120 824 FunFam Disease resistance protein (TIR-NBS-LRR class) 522 604 - -
Vimu9g01120 824 Gene3D - 357 514 IPR027417 -
Vimu9g01120 824 PRINTS Disease resistance protein signature 462 476 - -
Vimu9g01120 824 PRINTS Disease resistance protein signature 385 400 - -
Vimu9g01120 824 PRINTS Disease resistance protein signature 555 569 - -
Vimu9g01120 824 PRINTS Disease resistance protein signature 720 736 - -
Vimu9g01120 824 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 247 786 IPR044974 GO:0006952
Vimu9g01120 824 Pfam NB-ARC domain 365 594 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01120 Vimu-Chr9 18603923 18611618 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01120 362 786 WRKY Transcription Factor Family AT5G45050 34.716 1.64e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01120 - - var:108322534 1083.55