Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01116 ATGTCACGTGCAAAACCTTATGTTAAGCATGAAACCCTTCTCCAAAAACTAAGTCAAGAAAAGAAAAAGCTGAGGGCTTACAATCGGATAGAGAGCCTTCGAAAATATTGGAGTATCGCATTCTGTAAGGCTGCTGAAATTTCGAGGTCGGTAGTCCAGCACAGAGGAATAACAGATAATGAGATCAACTACATCGAGAAGAATGCTAGGGACGCACTTCGTGAGGCTTCTGGCATCGCCGGGGTTGTAATCCTCAATTCTAGGAATGAAAGTGAGGCTGTGAAAAATATTGTTAAAAATGTTACAAGTTTGTTGGACAAGACAGAGTTGTTTGTTGCCCATAATCCTGTCGGAGTAGAATCTCGAGTGCATGAAATGGTTCAATTGCTACAACAAAAACAATCAAACGATGTTCTACTACTTGGGGTATGGGGGATGGGAGGCATCGGTAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGGCGGAATTTTGAGGGAAGGAGTTTCCTTGCAGATATTAGGGAGGTTTGGGGGCAAGAAGCTGGCCACGTTTGTTTACAAGAACAACTTATATTTGATATCCACAAAGAAAACAATACAAGGATACATAACATTGAATCAGGAAAAGTTATCCTAAGAGAAAGACTTCGCAGTAAAAGGATACTTCTTATACTCGATGATGTAAATAAATTACAGCAATTAAATGCTGTGTGGAAATCTAGAATAATCATCACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGATCAAGTTTTCGCCATGACAGGAATGAATGTAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTCAAACAAGCAAGTCCCAAAGAAGATTTTATTGAACTTTCAAGAAACGTAGTTGCTTATGCTGGGGGCTTGCCACTTGCTCTTGAAGTCCTTGGGTCTTATTTGTTTGATATGGAGGTAACACAATGGAAGAGTGTATTGGAAAAACTTAGGAAAATTCCTAATGATGAAGTACAGGAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTCCTTGATATAGCATGTTTCTTTATAGGAAAGGATGTTATACATATATTGAATGGTTGTGGACTTTTCCCAGAAAATGGAATACGTGTCTTGGTAGAGCGAAGTCTTGTAACTGTGGATGATAAGAACCAACTTGGAATGCATGATTTGCTACGGGACATGGGAAGGGAAATTATTCGTTCAAAATCACCAATGGAGCTTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTGTTATCAAAAGAAACTGGAACAAAATTTATTGAGGGATTGGCTTTGAAGTTACATAGAACTAATACAAAATCTCTGTGCACTAAAGCATTTATGAACATGAAGAAACTCAGGTTGCTGCATCTTTCTGGTGTAGAATTTGTTGGAGATTTTGAATATCTTTCCAAAGACCTGAGATGCTATGTTGGCATGGATTTCCTTTTGCCTTCATACCAACAAGCTTTTATCAAGGAAGTCTAG 1557 0.3802 MSRAKPYVKHETLLQKLSQEKKKLRAYNRIESLRKYWSIAFCKAAEISRSVVQHRGITDNEINYIEKNARDALREASGIAGVVILNSRNESEAVKNIVKNVTSLLDKTELFVAHNPVGVESRVHEMVQLLQQKQSNDVLLLGVWGMGGIGKTTIAKAIYNKIGRNFEGRSFLADIREVWGQEAGHVCLQEQLIFDIHKENNTRIHNIESGKVILRERLRSKRILLILDDVNKLQQLNAVWKSRIIITTRDIHLLRGKRVDQVFAMTGMNVDESIELFSWHAFKQASPKEDFIELSRNVVAYAGGLPLALEVLGSYLFDMEVTQWKSVLEKLRKIPNDEVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDVIHILNGCGLFPENGIRVLVERSLVTVDDKNQLGMHDLLRDMGREIIRSKSPMELEERSRLWFHEDVLDVLSKETGTKFIEGLALKLHRTNTKSLCTKAFMNMKKLRLLHLSGVEFVGDFEYLSKDLRCYVGMDFLLPSYQQAFIKEV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01116 518 Gene3D - 9 108 IPR035897 -
Vimu9g01116 518 Pfam NB-ARC domain 120 339 IPR002182 GO:0043531
Vimu9g01116 518 SUPERFAMILY "Winged helix" DNA-binding domain 337 441 IPR036390 -
Vimu9g01116 518 PRINTS Disease resistance protein signature 140 155 - -
Vimu9g01116 518 PRINTS Disease resistance protein signature 217 231 - -
Vimu9g01116 518 PRINTS Disease resistance protein signature 302 316 - -
Vimu9g01116 518 PRINTS Disease resistance protein signature 471 487 - -
Vimu9g01116 518 SMART AAA_5 137 269 IPR003593 GO:0016887
Vimu9g01116 518 Gene3D - 268 351 IPR042197 -
Vimu9g01116 518 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 59 501 IPR044974 GO:0006952
Vimu9g01116 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 362 IPR027417 -
Vimu9g01116 518 Gene3D - 109 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01116 Vimu-Chr9 18578706 18581820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01116 117 481 WRKY Transcription Factor Family AT5G45050 36.935 3.99e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01116 - - var:108322530 848.58