Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01109 ATGTTGTCTGACCATATCATCTCTGCTGAAAGAATCAAGCAATTCATTCACATTCCATCAGAGCCTCCTGCCATTGTGGAGGATAACAAACCTTCATCTTCATGGCCTTCCAAGGGTAGGATCGATCTTCGAGCCCTAGAGATTAGATATCGTCCAAATGCTCAATTAGTTCTCAAGGGTATAAATTGTACGTTTCTAGAAGGGAGTAGAGTTGGAGTTGTTGGGAGGACTGAAAGTAGCAAAACTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTGATGGGGTTGAAGGATTTGAGAACAAAACTAAGCATCACCCGTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCACTGGGCTTCTATGAAGATGACAAAATATGGAAGGCTATAGAGAAATGTTAG 465 0.4129 MLSDHIISAERIKQFIHIPSEPPAIVEDNKPSSSWPSKGRIDLRALEIRYRPNAQLVLKGINCTFLEGSRVGVVGRTESSKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRTKLSITRQEPTLFKGSIRTNLDPLGFYEDDKIWKAIEKC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01109 154 Pfam ABC transporter 58 153 IPR003439 GO:0005524
Vimu9g01109 154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 153 IPR027417 -
Vimu9g01109 154 Gene3D - 24 154 IPR027417 -
Vimu9g01109 154 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 4 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01109 Vimu-Chr9 18534665 18535129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01109 39 136 Calmodulin-binding Proteins AT2G36910 30.000 2.25e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01109 - - pvu:PHAVU_010G136900g 287.73