Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01108 ATGGGCGAACATCAGGACACAAAAAACAACTACTTGCTTGCTTCATCAGGACACGATAAGCTTCATTTTTTTGGCCAAGAACAAATCACTATCTTGGGGCAGATTACTTACAGAACTACCTGGAAACCTAAACCACAACCACAGTCGTGCGGAGGGAGAAGTGTTTTCGGAGCCAAGAAAAGCACGGGCACAGAGGAGTGTTCTCGGAGTGCTGTTAAATGCAAGGGTTTAGGGACAAAGAGCGGAAGAGAGGAACGAGAGAATGAAAGTGAGGCTGTGAAAAATATTGTTAAAGATGTTACAAGTTTGTTGAACAAGACAGAGTTGTTTGTTGCCAATAATCCTGTCGGAGTAGAATCTCGAGTGCAAAAAATGGTTCAATTGCTAGAAGAAAAACAATCAAATGATGTTCTATTACTTGGGGTATGGGGGATGGGAGGCATTGGAAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGGCGAAATTTTGAGGGAAGGAGTTTCCTTGCAAATATTAGGGAGGGTTGGGGGCAAGAAGCTGGCCACGTTGCTTTACAAGAACAACTTCTATTGGATATCTACAAAGAAAACAGTACAAAGATACATAACATTGAATCAGGAAAAGTTATACTAAGAGAAAGACTTCGCCGTAAAAGGATACTTCTTATTCTCGATGATGTAAATAAATTACAGCAATTAAATGCTTTTTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGATCGAGTGTTTGCAATGACAGGAATGAATGAAGATGAATCTGTTGAGCTTTTTAGTTGGCATGCATTCAAACAAGCAAGTCCCAAAGAAGATTTTATTGAACTTTCAAGAAACGTAGTTGCTTATGCTGGGGGCTTGCCACTTGCTCTTCAAGTCCTTGGGTCTTATTTGTTTGATATGGAGGTAACAGAATGGAAGAGTGTATTGGAAAAACTTAGGAAAATTCCTAACGATGAAGTACAGGAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTCCTTGATATAGCATGTTTCTTTATAGGAAAGGATCGAAATGATGTTATACATATATTGAATGGTTGTGGACTTTTCGCTGAAAATGGAATACGTGTCTTGGTGGAGCGAAGTCTTGTAACTGTGGATGATAGGAACCAACTTGGAATGCATGATTTGCTACGGGATATGGGAAGGGAAATTGTTCGTTCAAAATCTCCAATGGAGCTTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTGTTGTCAAAAAAAACTAACTTGTTGGAGATTTTGAATATCTTTCCAAAGACCTAA 1404 0.3875 MGEHQDTKNNYLLASSGHDKLHFFGQEQITILGQITYRTTWKPKPQPQSCGGRSVFGAKKSTGTEECSRSAVKCKGLGTKSGREERENESEAVKNIVKDVTSLLNKTELFVANNPVGVESRVQKMVQLLEEKQSNDVLLLGVWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREGWGQEAGHVALQEQLLLDIYKENSTKIHNIESGKVILRERLRRKRILLILDDVNKLQQLNAFCGSREWFGSGSRIIITTRDIHLLRGKRVDRVFAMTGMNEDESVELFSWHAFKQASPKEDFIELSRNVVAYAGGLPLALQVLGSYLFDMEVTEWKSVLEKLRKIPNDEVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDRNDVIHILNGCGLFAENGIRVLVERSLVTVDDRNQLGMHDLLRDMGREIVRSKSPMELEERSRLWFHEDVLDVLSKKTNLLEILNIFPKT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01108 467 PRINTS Disease resistance protein signature 216 230 - -
Vimu9g01108 467 PRINTS Disease resistance protein signature 309 323 - -
Vimu9g01108 467 PRINTS Disease resistance protein signature 139 154 - -
Vimu9g01108 467 Gene3D - 274 358 IPR042197 -
Vimu9g01108 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 78 451 IPR044974 GO:0006952
Vimu9g01108 467 SUPERFAMILY "Winged helix" DNA-binding domain 344 451 IPR036390 -
Vimu9g01108 467 FunFam Disease resistance protein (TIR-NBS-LRR class) 276 358 - -
Vimu9g01108 467 Pfam NB-ARC domain 119 347 IPR002182 GO:0043531
Vimu9g01108 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 369 IPR027417 -
Vimu9g01108 467 Gene3D - 89 268 IPR027417 -
Vimu9g01108 467 SMART AAA_5 136 276 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01108 Vimu-Chr9 18528525 18532565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01108 116 442 WRKY Transcription Factor Family AT5G45050 37.952 3.98e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01108 - - var:108322534 671.774