Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01090 ATGATTGTTGCAATGGACTTGAATGCCTCGCCGGTTCCAGAGGAAGATGAAGATATTTTTGAAGAGAAGATACATGTTGAAGAGTTTCATGCACCCGAAGAGCGTCCAGAAACTGGAGCCGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGACCAGATGACAGACCTGTACAGGTGTCACAGTCACCAGGATATGATCAGCTATTTCCCTCTAAGAACCTTAAATCGTATGATAAAAGCAAGCTTCCTCCAGGGAGTGTTGCTGGTGTCTGCAATGGCTGTGGTGGAGTGCCTTCTGAAAATGCAAGAGGAGAGGAGCTTGGTCATACTTGTTCTTTACATGCAGGGTGGTTGGATTGTCCTTCATTTGGCCAGGAAATTTATGGCATGATACCTTCCAAGGTTCCACTTGGTGAATCTTTCCGTGATTCCATTCTTCCTGGTAAAAGATATTCATTTAAGCAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGCCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGTCTGATTTAAAAAAAGAGGGCATCAAGCATGTTAAGATTCAATGCAAGGGGCGTGATTCTGTACCTGATAATTTAGCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTATGTTCCGTCAAAAACAAAAGACCTATATACTTGTTCATTGTACACATGGGCATAATCGTACAGGGTACATGATCATTCACTATCTAATGCGTGCCATGTCTATGTCTGTTACTCAGGCAATAAAAACATTTTCTGAAGCTCGTCCTCCTGGAATCTACAAGCCTGATTATATTGATGCATTGTACACATTTTATCACGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCCACTCCTGAGTGGAAGAGCTCTCACCAACCTCTGGCTAAGGCTCAGTTCTGTCTACTCAGGGACAAACTCAGGGTTCTCAGCTCCTCACACCTTTTGACCCTGAGGGAGAACCATGAGACAGACACACGAATGACAAATGATGATGTTTTAGGAGACGAGATTCCTTCTGATCAGCAAGATGCACTGCGTCAATTCTGTTATCAAACGCTTAAATTGGTTGTTGGGGCTAGGGGACACACACAGTTTCCAGGATCACACCCAGTTTCTCTCAACAGAAGTGTCACAGTTCACTCTGAAACTATTTGCGCTGCTTCTGGTACTGAAGTTTCTTTCCTACCATCTTTACATTCCTCCATTGTGAGTAATTCAAGATGGCTAGTTAATAAAGATTCTGCAACAAAACTGGAAATTCCTTTGTGGCCATTGCTTGAAGATCTGCAGGGTTTGGGCGAGAAAACCCACCACTACACATTACTTGATGGTGAGATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATATCTTATCTATGATATGATGGCAATCAACCAAGTTTCGATAATAGAGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGTACTCATGAAGGACTATTGAAGTGGAAATATGCTTATCTGAATTCAGTTGACTTTCTTTTTGAGGTTGATGGTGATCGTGAGATGCTTTTTCTCTACGAACGGGGAAAGAAGAAACTCTTGGAAGGGAACAGGGTTGAGTTCACAGATGGCACAGATCCCTCACTTTATTCTGGAAAGATCATAGAATGTTGTTGGGATTTTGATAAACTGGAATGGAAGTTTATGCGTATCAGAACAGATAAATCAACTCCAAATGAGTTCAATACTTACAGGAAGGTGATGCGAAGCATAAGAGACAACATTACTGAGGAAGATTTGTTGAATGAAATAAGTGAGATTATCCGCCTTCCAATGTATGCTGACAGGATAAGAAATGACAGTAAAGCAAATCAACACGCTAATGTGGCAAGGCGAAGGTGA 2034 0.4184 MIVAMDLNASPVPEEDEDIFEEKIHVEEFHAPEERPETGADIARREREERKRRLKRERPDDRPVQVSQSPGYDQLFPSKNLKSYDKSKLPPGSVAGVCNGCGGVPSENARGEELGHTCSLHAGWLDCPSFGQEIYGMIPSKVPLGESFRDSILPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLAVNQFVYEVTQFMFRQKQKTYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKTFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKSSHQPLAKAQFCLLRDKLRVLSSSHLLTLRENHETDTRMTNDDVLGDEIPSDQQDALRQFCYQTLKLVVGARGHTQFPGSHPVSLNRSVTVHSETICAASGTEVSFLPSLHSSIVSNSRWLVNKDSATKLEIPLWPLLEDLQGLGEKTHHYTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIEVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDREMLFLYERGKKKLLEGNRVEFTDGTDPSLYSGKIIECCWDFDKLEWKFMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRNDSKANQHANVARRR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01090 677 CDD Adenylation_mRNA_capping 360 548 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vimu9g01090 677 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 439 548 - -
Vimu9g01090 677 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 217 285 IPR000387 GO:0016311|GO:0016791
Vimu9g01090 677 ProSitePatterns Tyrosine specific protein phosphatases active site. 238 248 IPR016130 GO:0016311|GO:0016791
Vimu9g01090 677 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 123 307 IPR029021 -
Vimu9g01090 677 Gene3D DNA ligase/mRNA capping enzyme 421 495 - -
Vimu9g01090 677 Gene3D - 582 654 IPR012340 -
Vimu9g01090 677 Gene3D DNA ligase/mRNA capping enzyme 496 547 - -
Vimu9g01090 677 Pfam mRNA capping enzyme, catalytic domain 494 547 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vimu9g01090 677 SUPERFAMILY Nucleic acid-binding proteins 551 662 IPR012340 -
Vimu9g01090 677 FunFam mRNA capping enzyme family protein 116 319 - -
Vimu9g01090 677 Pfam Dual specificity phosphatase, catalytic domain 172 291 IPR000340 GO:0008138|GO:0016311
Vimu9g01090 677 MobiDBLite consensus disorder prediction 26 79 - -
Vimu9g01090 677 PANTHER MRNA-CAPPING ENZYME 99 659 - -
Vimu9g01090 677 Pfam mRNA capping enzyme, C-terminal domain 552 645 IPR013846 -
Vimu9g01090 677 FunFam mRNA-capping enzyme 569 662 - -
Vimu9g01090 677 CDD RNA_5'-triphosphatase 123 288 - -
Vimu9g01090 677 PIRSF mRNA_capping_HCE 108 496 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vimu9g01090 677 PIRSF mRNA_capping_HCE 492 677 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vimu9g01090 677 SMART dsp_5 148 293 IPR020422 GO:0006470|GO:0008138
Vimu9g01090 677 Gene3D Protein tyrosine phosphatase superfamily 118 318 IPR029021 -
Vimu9g01090 677 MobiDBLite consensus disorder prediction 26 63 - -
Vimu9g01090 677 ProSiteProfiles Dual specificity protein phosphatase domain profile. 142 297 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01090 Vimu-Chr9 18203950 18235201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01090 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 53.259 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01090 K13917 - gmx:100776633 1002.28